Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_I05
         (1257 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    31   1.4  
02_05_0686 - 30900748-30902167,30903442-30904742                       31   1.4  
07_03_1136 + 24218601-24218734,24218769-24219906                       29   5.8  
07_01_0687 - 5197349-5198665                                           29   5.8  
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225           29   7.7  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 21/59 (35%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
 Frame = +2

Query: 998  PXPPPXGXGXXXFXXPXPXSPXXXXXXXPXXXGXGXXXXXPPPXG-GXXGXPPXXGGXP 1171
            P PPP G G      P P +        P   G G     PPP G G  G PP   G P
Sbjct: 1149 PPPPPVG-GLGGPPAPPPPAGFRGGTPPPNAHG-GVAPPPPPPRGHGGVGGPPTPPGAP 1205



 Score = 29.9 bits (64), Expect = 4.4
 Identities = 19/69 (27%), Positives = 19/69 (27%)
 Frame = -1

Query: 1164 PPXXGGXPXXPPXGGGXXXXXPXPXXXGXXXXXXXGEXGXGXXKXKXPXPXGGGXGXXXP 985
            P   GG P  PP GG      P P              G        P   GG  G   P
Sbjct: 1142 PEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTP 1201

Query: 984  XKXXPPPPP 958
                 PP P
Sbjct: 1202 PGAPAPPMP 1210


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 16/52 (30%), Positives = 16/52 (30%)
 Frame = +2

Query: 998  PXPPPXGXGXXXFXXPXPXSPXXXXXXXPXXXGXGXXXXXPPPXGGXXGXPP 1153
            P PPP            P  P       P     G     PPP GG  G PP
Sbjct: 327  PPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPP 378



 Score = 31.1 bits (67), Expect = 1.9
 Identities = 18/58 (31%), Positives = 18/58 (31%)
 Frame = +2

Query: 998  PXPPPXGXGXXXFXXPXPXSPXXXXXXXPXXXGXGXXXXXPPPXGGXXGXPPXXGGXP 1171
            P PPP   G      P P  P       P   G       PPP  G    PP   G P
Sbjct: 344  PPPPPPAKGP-----PPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVP 396


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 16/52 (30%), Positives = 16/52 (30%)
 Frame = -1

Query: 1152 GGXPXXPPXGGGXXXXXPXPXXXGXXXXXXXGEXGXGXXKXKXPXPXGGGXG 997
            GG P  PP  GG     P     G          G G        P GGG G
Sbjct: 115  GGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRG 166


>07_01_0687 - 5197349-5198665
          Length = 438

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 199 SALFTKNWRVARGLP--VNRNA-EGILTDGPDYTFLDGRP 309
           S+ +   WR  + LP  V R+A  G++ +G  Y  LDGRP
Sbjct: 209 SSRYHMRWRAKKALPMCVRRDAIGGVVINGVVYFLLDGRP 248


>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
          Length = 467

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 960  GGGGXXFSXXXXXPPPPP 1013
            GGGG  FS     PPPPP
Sbjct: 23   GGGGGGFSPTAAKPPPPP 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,148,040
Number of Sequences: 37544
Number of extensions: 461499
Number of successful extensions: 1440
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3887643768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)