Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_I05
(1257 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.43
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.43
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.43
U42848-5|AAN84855.1| 283|Caenorhabditis elegans Hypothetical pr... 30 4.0
U42848-4|AAA83610.2| 302|Caenorhabditis elegans Hypothetical pr... 30 4.0
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 4.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 4.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 4.0
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 9.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 9.2
AL032654-7|CAA21719.1| 219|Caenorhabditis elegans Hypothetical ... 29 9.2
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 29 9.2
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 29 9.2
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 29 9.2
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.1 bits (72), Expect = 0.43
Identities = 25/77 (32%), Positives = 25/77 (32%), Gaps = 6/77 (7%)
Frame = -1
Query: 1170 GXPPXXGGXPXXPPXGG--GXXXXXPXPXXXGXXXXXXXG----EXGXGXXKXKXPXPXG 1009
G PP GG P PP GG P P G G G P P
Sbjct: 718 GLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
Query: 1008 GGXGXXXPXKXXPPPPP 958
GG P PPPPP
Sbjct: 778 GGFKGGPP----PPPPP 790
Score = 31.5 bits (68), Expect = 1.3
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = -1
Query: 1242 PPXXXXXXXXGPXXXPXXXXXFXXGXPPXXGGXPXXPPXGGGXXXXXPXPXXXG 1081
PP GP P G PP GG P PP GG P P G
Sbjct: 731 PPGGLPPITGGPPPPPPPG-----GLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
Score = 29.5 bits (63), Expect = 5.2
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +3
Query: 999 PPPPPGXXGXXFXGXPXPXPXXXXXXXXXXXXXGGXXXXXPPXGGXXXXXP 1151
PPPPPG G P P P GG PP GG P
Sbjct: 728 PPPPPGGLPPITGGPPPPPP-----PGGLPPISGGPPPPPPPPGGCPPPPP 773
Score = 29.5 bits (63), Expect = 5.2
Identities = 20/63 (31%), Positives = 20/63 (31%)
Frame = +2
Query: 965 GGGXFFXGXXXPXPPPXGXGXXXFXXPXPXSPXXXXXXXPXXXGXGXXXXXPPPXGGXXG 1144
GG G P PPP G P P P P PPP GG G
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP----------PPPPPGGFKG 782
Query: 1145 XPP 1153
PP
Sbjct: 783 GPP 785
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.1 bits (72), Expect = 0.43
Identities = 25/77 (32%), Positives = 25/77 (32%), Gaps = 6/77 (7%)
Frame = -1
Query: 1170 GXPPXXGGXPXXPPXGG--GXXXXXPXPXXXGXXXXXXXG----EXGXGXXKXKXPXPXG 1009
G PP GG P PP GG P P G G G P P
Sbjct: 718 GLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
Query: 1008 GGXGXXXPXKXXPPPPP 958
GG P PPPPP
Sbjct: 778 GGFKGGPP----PPPPP 790
Score = 31.5 bits (68), Expect = 1.3
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = -1
Query: 1242 PPXXXXXXXXGPXXXPXXXXXFXXGXPPXXGGXPXXPPXGGGXXXXXPXPXXXG 1081
PP GP P G PP GG P PP GG P P G
Sbjct: 731 PPGGLPPITGGPPPPPPPG-----GLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
Score = 29.5 bits (63), Expect = 5.2
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +3
Query: 999 PPPPPGXXGXXFXGXPXPXPXXXXXXXXXXXXXGGXXXXXPPXGGXXXXXP 1151
PPPPPG G P P P GG PP GG P
Sbjct: 728 PPPPPGGLPPITGGPPPPPP-----PGGLPPISGGPPPPPPPPGGCPPPPP 773
Score = 29.5 bits (63), Expect = 5.2
Identities = 20/63 (31%), Positives = 20/63 (31%)
Frame = +2
Query: 965 GGGXFFXGXXXPXPPPXGXGXXXFXXPXPXSPXXXXXXXPXXXGXGXXXXXPPPXGGXXG 1144
GG G P PPP G P P P P PPP GG G
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP----------PPPPPGGFKG 782
Query: 1145 XPP 1153
PP
Sbjct: 783 GPP 785
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.1 bits (72), Expect = 0.43
Identities = 25/77 (32%), Positives = 25/77 (32%), Gaps = 6/77 (7%)
Frame = -1
Query: 1170 GXPPXXGGXPXXPPXGG--GXXXXXPXPXXXGXXXXXXXG----EXGXGXXKXKXPXPXG 1009
G PP GG P PP GG P P G G G P P
Sbjct: 301 GLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360
Query: 1008 GGXGXXXPXKXXPPPPP 958
GG P PPPPP
Sbjct: 361 GGFKGGPP----PPPPP 373
Score = 31.5 bits (68), Expect = 1.3
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = -1
Query: 1242 PPXXXXXXXXGPXXXPXXXXXFXXGXPPXXGGXPXXPPXGGGXXXXXPXPXXXG 1081
PP GP P G PP GG P PP GG P P G
Sbjct: 314 PPGGLPPITGGPPPPPPPG-----GLPPISGGPPPPPPPPGGCPPPPPPPPPGG 362
Score = 29.5 bits (63), Expect = 5.2
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +3
Query: 999 PPPPPGXXGXXFXGXPXPXPXXXXXXXXXXXXXGGXXXXXPPXGGXXXXXP 1151
PPPPPG G P P P GG PP GG P
Sbjct: 311 PPPPPGGLPPITGGPPPPPP-----PGGLPPISGGPPPPPPPPGGCPPPPP 356
Score = 29.5 bits (63), Expect = 5.2
Identities = 20/63 (31%), Positives = 20/63 (31%)
Frame = +2
Query: 965 GGGXFFXGXXXPXPPPXGXGXXXFXXPXPXSPXXXXXXXPXXXGXGXXXXXPPPXGGXXG 1144
GG G P PPP G P P P P PPP GG G
Sbjct: 316 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP----------PPPPPGGFKG 365
Query: 1145 XPP 1153
PP
Sbjct: 366 GPP 368
>U42848-5|AAN84855.1| 283|Caenorhabditis elegans Hypothetical
protein C31H1.6b protein.
Length = 283
Score = 29.9 bits (64), Expect = 4.0
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 130 RMNNLTGNKILKTITGLRRFSSCSALFTKN-WRVARGLPVNRNAEGILTDGP 282
R+ N K+L TIT L+ +S + N + RG+P + A+G DGP
Sbjct: 200 RIENRLSGKVLVTITNLKENNSLVTIIEGNICDIIRGMP-DYTAKGFRFDGP 250
>U42848-4|AAA83610.2| 302|Caenorhabditis elegans Hypothetical
protein C31H1.6a protein.
Length = 302
Score = 29.9 bits (64), Expect = 4.0
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 130 RMNNLTGNKILKTITGLRRFSSCSALFTKN-WRVARGLPVNRNAEGILTDGP 282
R+ N K+L TIT L+ +S + N + RG+P + A+G DGP
Sbjct: 219 RIENRLSGKVLVTITNLKENNSLVTIIEGNICDIIRGMP-DYTAKGFRFDGP 269
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 4.0
Identities = 19/72 (26%), Positives = 19/72 (26%), Gaps = 3/72 (4%)
Frame = -1
Query: 1164 PPXXGGXPXXPPXGG---GXXXXXPXPXXXGXXXXXXXGEXGXGXXKXKXPXPXGGGXGX 994
PP P PP G P P G G P P GG
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291
Query: 993 XXPXKXXPPPPP 958
PPPPP
Sbjct: 292 PRAGSPPPPPPP 303
Score = 28.7 bits (61), Expect = 9.2
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 1082 PXXXGXGXXXXXPPPXGGXXGXPPXXGG 1165
P G G PPP GG G P GG
Sbjct: 59 PQQGGFGGRTGSPPPFGGFSGAPQGFGG 86
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 4.0
Identities = 19/72 (26%), Positives = 19/72 (26%), Gaps = 3/72 (4%)
Frame = -1
Query: 1164 PPXXGGXPXXPPXGG---GXXXXXPXPXXXGXXXXXXXGEXGXGXXKXKXPXPXGGGXGX 994
PP P PP G P P G G P P GG
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312
Query: 993 XXPXKXXPPPPP 958
PPPPP
Sbjct: 313 PRAGSPPPPPPP 324
Score = 28.7 bits (61), Expect = 9.2
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 1082 PXXXGXGXXXXXPPPXGGXXGXPPXXGG 1165
P G G PPP GG G P GG
Sbjct: 80 PQQGGFGGRTGSPPPFGGFSGAPQGFGG 107
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 4.0
Identities = 19/72 (26%), Positives = 19/72 (26%), Gaps = 3/72 (4%)
Frame = -1
Query: 1164 PPXXGGXPXXPPXGG---GXXXXXPXPXXXGXXXXXXXGEXGXGXXKXKXPXPXGGGXGX 994
PP P PP G P P G G P P GG
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297
Query: 993 XXPXKXXPPPPP 958
PPPPP
Sbjct: 298 PRAGSPPPPPPP 309
Score = 28.7 bits (61), Expect = 9.2
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 1082 PXXXGXGXXXXXPPPXGGXXGXPPXXGG 1165
P G G PPP GG G P GG
Sbjct: 65 PQQGGFGGRTGSPPPFGGFSGAPQGFGG 92
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical protein
T24B8.4 protein.
Length = 866
Score = 24.6 bits (51), Expect(2) = 7.4
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -1
Query: 1023 PXPXGGGXGXXXPXKXXPPPPP 958
P P GG P PPPPP
Sbjct: 97 PPPMMGGIPPPPPMFGAPPPPP 118
Score = 22.6 bits (46), Expect(2) = 7.4
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = -1
Query: 1164 PPXXGGXPXXPPXGGGXXXXXP 1099
PP GG P PP G P
Sbjct: 77 PPGPGGIPPPPPMFAGGIPPPP 98
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 9.2
Identities = 18/64 (28%), Positives = 20/64 (31%)
Frame = +2
Query: 980 FXGXXXPXPPPXGXGXXXFXXPXPXSPXXXXXXXPXXXGXGXXXXXPPPXGGXXGXPPXX 1159
+ G P PPP P P +P P PPP G G PP
Sbjct: 256 YQGQYPPVPPPP-PSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPG-PPGM 313
Query: 1160 GGXP 1171
G P
Sbjct: 314 PGMP 317
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 9.2
Identities = 18/64 (28%), Positives = 20/64 (31%)
Frame = +2
Query: 980 FXGXXXPXPPPXGXGXXXFXXPXPXSPXXXXXXXPXXXGXGXXXXXPPPXGGXXGXPPXX 1159
+ G P PPP P P +P P PPP G G PP
Sbjct: 266 YQGQYPPVPPPP-PSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPG-PPGM 323
Query: 1160 GGXP 1171
G P
Sbjct: 324 PGMP 327
>AL032654-7|CAA21719.1| 219|Caenorhabditis elegans Hypothetical
protein Y52B11A.5 protein.
Length = 219
Score = 28.7 bits (61), Expect = 9.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 1011 GGGXGXXXPXKXXPPPPP 958
GGG G P + PPPPP
Sbjct: 23 GGGKGRPPPARPPPPPPP 40
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 28.7 bits (61), Expect = 9.2
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +2
Query: 1007 PPXGXGXXXFXXPXPXSPXXXXXXXPXXXGXGXXXXXPPPXGGXXGXPP 1153
PP G G F P P P G G PP G PP
Sbjct: 83 PPPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPP 131
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 28.7 bits (61), Expect = 9.2
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +2
Query: 1007 PPXGXGXXXFXXPXPXSPXXXXXXXPXXXGXGXXXXXPPPXGGXXGXPP 1153
PP G G F P P P G G PP G PP
Sbjct: 106 PPPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPP 154
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 28.7 bits (61), Expect = 9.2
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +2
Query: 1007 PPXGXGXXXFXXPXPXSPXXXXXXXPXXXGXGXXXXXPPPXGGXXGXPP 1153
PP G G F P P P G G PP G PP
Sbjct: 356 PPPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPP 404
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,046,651
Number of Sequences: 27780
Number of extensions: 368112
Number of successful extensions: 1148
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3495543430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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