Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_I03
         (1257 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81543-3|CAB04425.1|  322|Caenorhabditis elegans Hypothetical pr...    33   0.56 
U23177-8|AAM22054.1|  409|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U23177-7|AAM22053.1|  867|Caenorhabditis elegans Hypothetical pr...    29   5.2  

>Z81543-3|CAB04425.1|  322|Caenorhabditis elegans Hypothetical
           protein F49B2.3 protein.
          Length = 322

 Score = 32.7 bits (71), Expect = 0.56
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
 Frame = -3

Query: 280 TATR-SDSRTPPPTGHAAARPIKMTQA*D*G-----VRGNLVEAIVRAEASPLGERPETS 119
           T+TR S +R PPP   +  +P++     D G     V G+L + +    A+P+G +P T 
Sbjct: 146 TSTRDSGNRPPPPRERSGTQPVRQAAGYDQGHELSCVSGSL-QRLWPTAAAPVGGQPSTP 204

Query: 118 TRGL--AQHVPRARGAG 74
           +R    +   PRA G G
Sbjct: 205 SREFNGSHGPPRAPGLG 221


>U23177-8|AAM22054.1|  409|Caenorhabditis elegans Hypothetical
           protein C56G2.1b protein.
          Length = 409

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 170 FNQIPSHPSILSLRHLDRACSCVXG 244
           F Q P+HPS  SLRHLD     + G
Sbjct: 196 FIQQPTHPSFASLRHLDMYMGSLYG 220


>U23177-7|AAM22053.1|  867|Caenorhabditis elegans Hypothetical
           protein C56G2.1a protein.
          Length = 867

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 170 FNQIPSHPSILSLRHLDRACSCVXG 244
           F Q P+HPS  SLRHLD     + G
Sbjct: 654 FIQQPTHPSFASLRHLDMYMGSLYG 678


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,473,843
Number of Sequences: 27780
Number of extensions: 112587
Number of successful extensions: 347
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3495543430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)