Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_I02
         (1295 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   2.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   5.0  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 15/51 (29%), Positives = 15/51 (29%)
 Frame = -3

Query: 963 GGKKXXPPPGGXXGGGXGXNXPPXXGXXGXXRXRXGXPPRGGXXRXGPPXP 811
           G     P  GG      G   P      G      G PP GG    G P P
Sbjct: 31  GAAVQVPQGGGAVQPDPGSCDPSVGLRQGIPPHHYGGPPSGGQPPQGMPYP 81


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 10/21 (47%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
 Frame = -3

Query: 945  PPPGGXXG-GGXGXNXPPXXG 886
            PPP G  G G  G   PP  G
Sbjct: 1112 PPPSGSSGPGSTGSKSPPVAG 1132



 Score = 22.2 bits (45), Expect = 8.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 936 GGXXGGGXGXNXPP 895
           GG  G G G N PP
Sbjct: 524 GGGGGSGSGNNQPP 537


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.315    0.155    0.584 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,691
Number of Sequences: 336
Number of extensions: 4072
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 38227092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)