Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_I02
(1295 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 37 0.007
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.037
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 32 0.20
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.4
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 28 3.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 7.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 7.5
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 7.5
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 27 7.5
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 27 7.5
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 36.7 bits (81), Expect = 0.007
Identities = 36/161 (22%), Positives = 38/161 (23%), Gaps = 2/161 (1%)
Frame = +1
Query: 412 PPXGGGPXXXGXPXXXPPPXXRGPXXRLXGXGFPPPXXXGSXAPXXRGTGXXGPFXXXGG 591
PP G G P PPP PP P R G
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAG----SIPLPPQGRSAPPPPPPRSAPSTG------- 373
Query: 592 XXXXPLNXXXXXGXPHGPXPXXXRPXXRPSPPXGXXPPGFXPPXGXAPRXXPRXPPGXPP 771
PL+ P P P PP G PP P P PP PP
Sbjct: 374 RQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPP 433
Query: 772 GXXXAXXXXXXXXXXXXXXPXXXP--PXXXPPAXPXXPXXP 888
+ P P P A P P P
Sbjct: 434 SAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/41 (29%), Positives = 14/41 (34%)
Frame = -3
Query: 1176 PPXPXXXXGXSPRXXXPPPXXGGXXXPPPPXXXPGXGGEXP 1054
PP P + PP PPPP P G + P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 34.3 bits (75), Expect = 0.037
Identities = 37/144 (25%), Positives = 40/144 (27%)
Frame = +3
Query: 231 PPPLXXXXYPXVXPPXLXWARXPSPPPFXXXXGVPXGXGSPXVSPLRGXVCPVXXXXXAX 410
PP P V P + A P P P VP G+P V P P
Sbjct: 1083 PPVPAPSGIPPVPKPSV--AAPPVPKPSVAVPPVPAPSGAPPV-PKPSVAAPPVPVPSGA 1139
Query: 411 PPXGGXXXXXGXPXXXPPPSXPGPXXPAXGXXXPAPPXXGFXXSPXPGDGXGRAFXPXXR 590
PP P P + P P PA P G P P G P
Sbjct: 1140 PPV-PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPA-PSSGIPPVPKPAAG----VPPVPP 1193
Query: 591 XXXXPPXXXRXXGXPPWAXPPXGP 662
PP G PP P P
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAP 1217
Score = 33.1 bits (72), Expect = 0.086
Identities = 33/140 (23%), Positives = 35/140 (25%), Gaps = 1/140 (0%)
Frame = +3
Query: 234 PPLXXXXYPXVXPPXLXWARXPSPPPFXXXXG-VPXGXGSPXVSPLRGXVCPVXXXXXAX 410
PP P P AR P P VP P+ PV
Sbjct: 991 PPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTP 1050
Query: 411 PPXGGXXXXXGXPXXXPPPSXPGPXXPAXGXXXPAPPXXGFXXSPXPGDGXGRAFXPXXR 590
P P P PS P PA P P G P P A P +
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKP----SVAAPPVPK 1106
Query: 591 XXXXPPXXXRXXGXPPWAXP 650
P G PP P
Sbjct: 1107 PSVAVPPVPAPSGAPPVPKP 1126
Score = 30.3 bits (65), Expect = 0.61
Identities = 25/88 (28%), Positives = 26/88 (29%)
Frame = +3
Query: 297 PSPPPFXXXXGVPXGXGSPXVSPLRGXVCPVXXXXXAXPPXGGXXXXXGXPXXXPPPSXP 476
P P P VP G+P V PV PP G P PPPS
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPV--PKPAAGVPPV-PPPSEA 1197
Query: 477 GPXXPAXGXXXPAPPXXGFXXSPXPGDG 560
P P PP P P G
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPSAG 1225
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.9 bits (69), Expect = 0.20
Identities = 29/91 (31%), Positives = 30/91 (32%)
Frame = -1
Query: 935 GGGXGGXXXXTXPPXXGXXGXXGXAGGXXXGGXXXGXXXXXXXXXXXXXGAXXXPGGXPG 756
GGG GG + P G G G G G G G PGG G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG----PGGFGG 242
Query: 755 GXRGXXRGAXPXGGXNPGGXXPXGGEGRXXG 663
G G G GG PGG GG G G
Sbjct: 243 GPGGFGGGLGGFGG-GPGGF--GGGPGGHGG 270
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -3
Query: 1173 PXPXXXXGXSPRXXXPPPXXGGXXXPPPPXXXP 1075
P P G P PPP G PPPP P
Sbjct: 752 PPPAPIMGGPP-PPPPPPGVAGAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/41 (31%), Positives = 14/41 (34%)
Frame = -3
Query: 1176 PPXPXXXXGXSPRXXXPPPXXGGXXXPPPPXXXPGXGGEXP 1054
PP +P PP PPPP PG G P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP 775
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -3
Query: 1128 PPPXXGGXXXPPPPXXXPGXGGEXP 1054
P P GG PPPP G G P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +1
Query: 664 PXXRPSPPXGXXPPGFXPPXGXAPRXXPRXPPGXP 768
P P+P G PP PP G A P PP P
Sbjct: 750 PVPPPAPIMGGPPPP-PPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 9.9
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = -1
Query: 1175 PPPXGXXXGXAPAXXXPPPXXGXXXXPXXPXXPXGGGXKXPXXP 1044
PPP APA PP P P P G P P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 785 AXXXPGGXPGGXRGXXRGAXPXGGXN 708
A PGG PGG G G P G N
Sbjct: 611 AGGAPGGAPGGMPGGAPGGAPGGADN 636
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/41 (31%), Positives = 13/41 (31%)
Frame = +1
Query: 649 PXXXRPXXRPSPPXGXXPPGFXPPXGXAPRXXPRXPPGXPP 771
P P SPP PP P P PP PP
Sbjct: 156 PTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +1
Query: 679 SPPXGXXPPGFXPPXGXAPRXXPRXPPGXPPG 774
S P G PP PP G P P PP PPG
Sbjct: 3 SLPPGNPPPP-PPPPGFEPPSQP--PPPPPPG 31
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 26.6 bits (56), Expect = 7.5
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = -2
Query: 580 GQKALPXPSPGXGEXXNPXXGGAGXXXPXAGXXGP-GXEGGGXXXG 446
G +A P P G P GG G P G G G GGG G
Sbjct: 92 GHRAYYAPPPPRGPLFGPRIGG-GHHGPLHGPHGGFGGRGGGRMGG 136
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 785 AXXXPGGXPGGXRGXXRGAXPXGGXNPGG 699
A PGG PG G GA P G PGG
Sbjct: 611 AGGAPGGMPGAAPGAAPGAAP--GAAPGG 637
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = +1
Query: 637 HGPXPXXXRPXXRPSPPXGXXPPGFXPPXGXAPRXXPRXPPGXPP 771
H P P +P RP PP P + P +P P P PP
Sbjct: 142 HNPLPVSCQPVLRP-PPVPQVPSHWYPVSLPSPN-LPHQPISKPP 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.155 0.584
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,802
Number of Sequences: 5004
Number of extensions: 38260
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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