Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_I01
         (1102 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...   294   2e-80
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    31   0.38 
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha...    29   0.87 
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    27   4.6  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   8.1  

>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score =  294 bits (721), Expect = 2e-80
 Identities = 135/235 (57%), Positives = 172/235 (73%)
 Frame = +2

Query: 200 EIAKQGIQFNKDFGQHILKNPLIITSMLDKSGLRPTDVALEIGPGTGNMTVKLLDRVKKV 379
           E+     +FNKDFGQHILKNPL+   ++DK+ L+ +D  LE+GPGTGN+TV++L++ +KV
Sbjct: 16  EVRNTVFKFNKDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLTVRMLEKARKV 75

Query: 380 LACEIDTRLVAELQKRVQGTPYQAKLQILVGDVLKTELPFFDICVANIPYQISSPLVFKL 559
           +A E+D R+ AE+ KRVQGTP + KLQ+++GDV+KT+LP+FD+CV+N PYQISSPLVFKL
Sbjct: 76  IAVEMDPRMAAEITKRVQGTPKEKKLQVVLGDVIKTDLPYFDVCVSNTPYQISSPLVFKL 135

Query: 560 LLHRPFFRCAVLMFQKEFAQRLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFRPPPK 739
           L  RP  R A+LMFQ+EFA RLVA+PGD LYCRLS N Q+ A V  +MKVGKNNFRPPP 
Sbjct: 136 LQQRPAPRAAILMFQREFALRLVARPGDPLYCRLSANVQMWAHVKHIMKVGKNNFRPPPL 195

Query: 740 VESSXXXXXXXXXXXXXXFVXWDGLTXIAFVRKNKTLSAAFKHATTXAAWXKNYR 904
           VESS              F  WDGL  I F+RKNKT+ A FK ++       NYR
Sbjct: 196 VESSVVRIEPKNPPPPLAFEEWDGLLRIVFLRKNKTIGACFKTSSIIEMVENNYR 250


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 30.7 bits (66), Expect = 0.38
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +2

Query: 260 PLIITSML-DKSGLRPTDVALEIGPGTGNMTVKLL-DRVKKVLACEIDTRLVAELQKR 427
           P+ IT  + D+  +  T + LE+G GTG  T +++    K+++A ++   ++  L+K+
Sbjct: 25  PIGITDWITDEFLIDETSIILELGAGTGKFTPRIIASHPKEIIAVDVYPEMLDVLRKK 82


>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 29.5 bits (63), Expect = 0.87
 Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +2

Query: 260 PLIITSMLDKSGLRPTDVALEIGPGTGNMTVKLL-DRVKKVLACEIDTRLVAELQKR 427
           P I   + D+  +  T   LE+G G+G +T +++  + K+++A +    ++  L+K+
Sbjct: 22  PQITEWLNDEFSVNETSTILELGAGSGKLTPRIIASQPKEIIAVDTYVEMLDVLKKK 78


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 820 NSICKKK*NTLSCIQTCNHXGCLG 891
           N+I +KK   +SC+ T N  GCLG
Sbjct: 175 NNILQKK--AISCLDTTNAVGCLG 196


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 447 KQNYKFWLEMF*KQNYHFLIYV*QIFHIKLVHL*C 551
           K  + FWL  F   N  FL+++  I H+  ++  C
Sbjct: 19  KNYWHFWLRSFMSNNRKFLVHIHLIPHLNSLYSIC 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,655,238
Number of Sequences: 5004
Number of extensions: 72868
Number of successful extensions: 190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 581717144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)