Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_I01
(1102 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0548 + 19349943-19350290,19350372-19351100 187 2e-47
10_02_0111 + 5381779-5382117,5382775-5382798 98 9e-21
10_02_0112 + 5385660-5385821,5386337-5386876 77 2e-14
02_01_0175 - 1198657-1198737,1199080-1199190,1199488-1199540,120... 69 5e-12
01_03_0293 + 14742630-14743042,14743073-14743370 60 3e-09
06_03_0102 - 16662937-16663245 57 3e-08
06_01_0227 - 1733119-1734099 30 3.7
01_02_0017 - 10215995-10217018,10217120-10217249,10217364-10217496 29 8.7
>07_03_0548 + 19349943-19350290,19350372-19351100
Length = 358
Score = 187 bits (455), Expect = 2e-47
Identities = 97/216 (44%), Positives = 130/216 (60%), Gaps = 1/216 (0%)
Frame = +2
Query: 221 QFNKDFGQHILKNPLIITSMLDKSGLRPTDVALEIGPGTGNMTVKLLDR-VKKVLACEID 397
+ +K GQH+L NP ++ +++ ++ LRP D LE+GPGTGN+TV+LL+ +V A EID
Sbjct: 36 RLHKPRGQHLLTNPRVLDAIVRRAALRPGDAVLEVGPGTGNLTVRLLESPAARVSAVEID 95
Query: 398 TRLVAELQKRVQGTPYQAKLQILVGDVLKTELPFFDICVANIPYQISSPLVFKLLLHRPF 577
R+V + RV KL ++ D ++ E P FD+CVANIPY ISSPL+ KLL
Sbjct: 96 PRMVDAVTARVDALGLAHKLTVIRADAVEAEFPEFDVCVANIPYGISSPLIAKLLFGPYR 155
Query: 578 FRCAVLMFQKEFAQRLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFRPPPKVESSXX 757
FR A L+ QKEFA+RLVA PGD Y RL+ N +++A +LM V K +F P PKV+SS
Sbjct: 156 FRAATLLLQKEFARRLVAAPGDSEYNRLAANVRMVADARLLMDVSKRDFVPMPKVDSSLV 215
Query: 758 XXXXXXXXXXXXFVXWDGLTXIAFVRKNKTLSAAFK 865
W T F +KNKTL A FK
Sbjct: 216 EIRPRAAEPNVDLAEWLAFTRSCFGQKNKTLGAIFK 251
>10_02_0111 + 5381779-5382117,5382775-5382798
Length = 120
Score = 98.3 bits (234), Expect = 9e-21
Identities = 45/83 (54%), Positives = 62/83 (74%), Gaps = 1/83 (1%)
Frame = +2
Query: 215 GIQFNKDFGQHILKNPLIITSMLDKSGLRPTDVALEIGPGTGNMTVKLLDR-VKKVLACE 391
GI F K GQHIL+NP ++ S+++K+GL+PTD LEIGPGTGN+T +LL VK V+A E
Sbjct: 31 GIPFEKSKGQHILRNPALVDSIVEKAGLKPTDTVLEIGPGTGNLTKRLLQAGVKAVVAVE 90
Query: 392 IDTRLVAELQKRVQGTPYQAKLQ 460
+D R+V EL +R QG P ++L+
Sbjct: 91 LDPRMVLELNRRFQGDPLASRLK 113
>10_02_0112 + 5385660-5385821,5386337-5386876
Length = 233
Score = 77.4 bits (182), Expect = 2e-14
Identities = 37/80 (46%), Positives = 46/80 (57%)
Frame = +2
Query: 665 INTQLLARVDMLMKVGKNNFRPPPKVESSXXXXXXXXXXXXXXFVXWDGLTXIAFVRKNK 844
+++ LL+RV L+KVG+NNFRPPPKV+SS F WDGL + F RKNK
Sbjct: 51 LSSSLLSRVSHLLKVGRNNFRPPPKVDSSVVRIEPRKPLPPVSFKEWDGLVRLCFNRKNK 110
Query: 845 TLSAAFKHATTXAAWXKNYR 904
TL A FK KNY+
Sbjct: 111 TLGAIFKQKRVLELLEKNYK 130
>02_01_0175 -
1198657-1198737,1199080-1199190,1199488-1199540,
1200131-1200215,1200519-1200614,1200729-1200821,
1201640-1201696,1201826-1201975,1202819-1202893
Length = 266
Score = 69.3 bits (162), Expect = 5e-12
Identities = 57/193 (29%), Positives = 88/193 (45%), Gaps = 16/193 (8%)
Frame = +2
Query: 221 QFNKDFGQHILKNPLIITSMLDKSGLRPTDVALEIGPGTGNMTVKLLDRVKKVLACEIDT 400
Q K G++ + N + ++ +G+ DV LEIGPGTG++T LLD V A E D
Sbjct: 18 QGTKGDGENYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLDAGATVFAVEKDK 77
Query: 401 RLVAELQKRVQGTPYQAKLQILVGDVLKTE-----LPFFD----------ICVANIPYQI 535
+ + R T +L+I+ D+ K LPF + V+N+P+ +
Sbjct: 78 HMATLVNDRFGST---EQLKIIEEDITKFNVRSHFLPFLEEKSHHTRKYAKVVSNLPFNV 134
Query: 536 SSPLVFKLLLHRPFFRCAVLMFQKEFAQRLV-AKPGDKLYCRLSINTQLLARVDMLMKVG 712
S+ +V LL F VL+ Q E A R A Y +++ + + KV
Sbjct: 135 STEVVKLLLPMGDVFSVMVLLLQDETALRFADASIQTPEYRPINVFVNFYSEPEYKFKVE 194
Query: 713 KNNFRPPPKVESS 751
+ NF P PKV S+
Sbjct: 195 RTNFFPQPKVNSA 207
>01_03_0293 + 14742630-14743042,14743073-14743370
Length = 236
Score = 60.1 bits (139), Expect = 3e-09
Identities = 37/79 (46%), Positives = 46/79 (58%)
Frame = +2
Query: 488 ELPFFDICVANIPYQISSPLVFKLLLHRPFFRCAVLMFQKEFAQRLVAKPGDKLYCRLSI 667
ELP FDICVA+IPY ISSPL KLL+ FR FA+RL+ PG L+
Sbjct: 4 ELPKFDICVASIPYGISSPLTAKLLIGSHRFRA-------RFARRLMGTPGHGERNLLAT 56
Query: 668 NTQLLARVDMLMKVGKNNF 724
N +L+A V +LM V + F
Sbjct: 57 NARLVADVRLLMDVSRPEF 75
>06_03_0102 - 16662937-16663245
Length = 102
Score = 56.8 bits (131), Expect = 3e-08
Identities = 23/42 (54%), Positives = 32/42 (76%)
Frame = +2
Query: 215 GIQFNKDFGQHILKNPLIITSMLDKSGLRPTDVALEIGPGTG 340
GI F+K GQHIL+NP ++ S+++K+GL+PTD LEIG G
Sbjct: 30 GISFDKSKGQHILRNPALVDSIVEKAGLKPTDTVLEIGSARG 71
>06_01_0227 - 1733119-1734099
Length = 326
Score = 29.9 bits (64), Expect = 3.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 320 EIGPGTGNMTVKLLDRVKKVLACEIDTRLVAELQKRVQGTPYQA 451
+ G GTG++ + L + VLA +I +V+E Q++ + A
Sbjct: 155 DAGCGTGSLAIPLASQGASVLASDISAAMVSEAQRQAEAAAMAA 198
>01_02_0017 - 10215995-10217018,10217120-10217249,10217364-10217496
Length = 428
Score = 28.7 bits (61), Expect = 8.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 363 SSNLTVILPVPGPISSATSVGLNPDLSNIEVIISGFFN 250
SS ++ ++P P + +TS GLNP N +G N
Sbjct: 257 SSTISTVMPPVSPSTLSTSTGLNPSPDNANSRGTGIHN 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,939,102
Number of Sequences: 37544
Number of extensions: 405618
Number of successful extensions: 891
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3304646468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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