Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_H23
         (1171 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    24   2.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.0  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.2 bits (50), Expect(2) = 2.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 387  PXPFXPPXLPPPP 349
            P P  PP  PPPP
Sbjct: 1722 PMPAGPPSAPPPP 1734



 Score = 21.8 bits (44), Expect(2) = 2.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 540  PXPPLFXXGXCXPPPKXXPPXPXG 469
            P PP+       PPP   PP P G
Sbjct: 1708 PPPPM-----SVPPPPSAPPMPAG 1726


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +2

Query: 467 PPXGXGGFXLGGGXXXPXXKRGGXGQXRGXXGNXXKXGGKRXXXKGG 607
           PP G GGF   GG        GG G   G  G      G      GG
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.150    0.476 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,037
Number of Sequences: 5004
Number of extensions: 17690
Number of successful extensions: 44
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 627537330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)