Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_H22
(1118 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0218 + 18219956-18220555 33 0.41
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165 30 2.9
01_05_0510 - 22816607-22816916,22817005-22817177,22817341-228176... 30 2.9
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365... 29 5.1
12_01_0816 + 7502669-7503145 29 6.7
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254 29 6.7
08_01_0156 - 1233431-1233925 29 8.8
06_02_0194 + 12885340-12885708,12886098-12886367,12886476-128865... 29 8.8
>06_03_0218 + 18219956-18220555
Length = 199
Score = 33.1 bits (72), Expect = 0.41
Identities = 22/63 (34%), Positives = 27/63 (42%)
Frame = -2
Query: 445 NGGFVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 266
NGG ++ A +T P R R R E G + KR+GR R G RGKR
Sbjct: 81 NGGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKR 136
Query: 265 LVS 257
S
Sbjct: 137 RAS 139
>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
Length = 430
Score = 30.3 bits (65), Expect = 2.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 280 SRGKRLVSL*SCRVSPPLT*ASIFVMXVQGGGAYGKTPAT 161
SRGK L+S + R PP + + V+ + GGG G P T
Sbjct: 25 SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64
>01_05_0510 -
22816607-22816916,22817005-22817177,22817341-22817607,
22817951-22818393,22818474-22818635,22820991-22821414,
22823177-22823227
Length = 609
Score = 30.3 bits (65), Expect = 2.9
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Frame = +1
Query: 31 SSXKSRSQLTQRRSSGSPXXQGLTQAITCAQKASKRPGHRKKAALLA---FFHRLRPPVR 201
SS S + SS S L +A+ AQ + + + +A ++A + + + V
Sbjct: 90 SSSSSAAVAMLASSSSSSTWSELQRAMPAAQSSWSQRNYPIQADVVAKAIWDPKFQATVA 149
Query: 202 ASQKSTLKSEVAKPDRTIKIPGVSPW--------KLPRALSCSDPAAY-RIPVRLSP 345
A+ S ++ ++ +PD T+K P + KLP +L S AA+ +IPV P
Sbjct: 150 AAVASYVRDQMDRPDETVKFPSCDAYFDTIQSKKKLPLSLQESLTAAFAQIPVSSFP 206
>05_01_0462 -
3658153-3658290,3658394-3658540,3658622-3658720,
3658802-3659253,3659597-3660280,3662072-3662180
Length = 542
Score = 29.5 bits (63), Expect = 5.1
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Frame = +2
Query: 275 PGSSLVRSPVPTLPLTGYLSAFLPSGSVALS-HSSRCR-YLSSV*VVRSKLGCVHEPPVQ 448
P S+ + +PVPTLP++ + F G S H + R Y S G V P
Sbjct: 282 PQSTNISAPVPTLPISCDSAPFAHGGYAPRSAHRNNLRTYPPPAFASSSNPGAVSHEPAI 341
Query: 449 PDRCALSGNYRLESNPVRHDLSPLAAATGNRISRARYV 562
P + +Y ++ + P A + R+V
Sbjct: 342 PSYPPAAPSYPPATSAASSSVQPFHAEAAAHLRHPRHV 379
>12_01_0816 + 7502669-7503145
Length = 158
Score = 29.1 bits (62), Expect = 6.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 464 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 333
R SG +R V PAW ER + ++ +V E+A ERR
Sbjct: 8 RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51
>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
Length = 425
Score = 29.1 bits (62), Expect = 6.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 643 QQSADTKYCSSSVAVVRPPLQELCSTAYIPRSA 545
Q S K SSVA PP + L ST +PR++
Sbjct: 176 QNSIAAKLACSSVAAASPPPRNLVSTTPVPRNS 208
Score = 28.7 bits (61), Expect = 8.8
Identities = 24/71 (33%), Positives = 30/71 (42%)
Frame = -2
Query: 742 RNLLLANKKTTATSGGLFAGSRATNSFSEGNWLQQSADTKYCSSSVAVVRPPLQELCSTA 563
RN + AN A+S A N S S SSSVA PP + L ST
Sbjct: 206 RNSITAN---LASSSVAAASPPPRNLVSTTPVPHNSIAANLASSSVAAASPPPRNLVSTT 262
Query: 562 YIPRSANPVTS 530
+PR NP+ +
Sbjct: 263 PVPR--NPIAA 271
>08_01_0156 - 1233431-1233925
Length = 164
Score = 28.7 bits (61), Expect = 8.8
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -2
Query: 418 LGANDLHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 245
LG D TE+ A A A+R E+ GG G R G RA + +G +
Sbjct: 89 LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148
Query: 244 RVSPPLT 224
R SP ++
Sbjct: 149 RASPTVS 155
>06_02_0194 +
12885340-12885708,12886098-12886367,12886476-12886592,
12888044-12888094,12889599-12889719,12890146-12890311,
12890598-12890691
Length = 395
Score = 28.7 bits (61), Expect = 8.8
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = -3
Query: 732 CLQTKKPPLPAVVC-----LPDQELPTLFPKVTGFSRAQIPNTVLL 610
CL ++PP PA +C LPD + T+ + F R VLL
Sbjct: 46 CLALRRPPPPAELCVLLNDLPDNDFATVVKSLVEFRRNNGDEPVLL 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,297,298
Number of Sequences: 37544
Number of extensions: 669545
Number of successful extensions: 2141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2140
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3374709644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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