Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_H16
         (1170 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    34   0.044
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    34   0.044
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    33   0.058
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    33   0.076
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    31   0.31 
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    31   0.41 
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    29   1.6  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    28   2.9  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    27   3.8  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    27   3.8  
SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe...    27   5.0  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   5.0  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    27   6.6  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    26   8.8  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   8.8  

>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 33.9 bits (74), Expect = 0.044
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +1

Query: 286 FSXYGPLRHVWVASNPP-----GFAFVEFEAPRXAEAAVRGLDGRTXCGRXARVEMS 441
           FS  GP++H  V +NP      G+ FV F     A+ A + L  +   GR  R++ +
Sbjct: 25  FSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFA 81


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 33.9 bits (74), Expect = 0.044
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 337 GFAFVEFEAPRXAEAAVRGLDGRTXCGRXARVEMS 441
           GF F EF+ P  AE A+ GLDG+   G     + +
Sbjct: 352 GFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 33.5 bits (73), Expect = 0.058
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +1

Query: 295 YGPLRHVWVASNPPGFAFVEFEAPRXAEAAVRGLDGRTXCGRXARVEM 438
           YG + H+ V  N  G  FV+FE    AE A+ GL  R   GR  +  +
Sbjct: 541 YGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKASI 588


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 33.1 bits (72), Expect = 0.076
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
 Frame = +1

Query: 184 PSKXHRPRCHALVPAKFXXGALGHHAXXPXLXAAFSXYGPLRHVWV-----ASNPPGFAF 348
           P+K  +P   +        G L  +     L   F  YG +    V     +    G+ +
Sbjct: 249 PAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGY 308

Query: 349 VEFEAPRXAEAAVRGLDGRTXCGRXARVEMSN 444
           V+FE P  A+AAV     +   GR   +++SN
Sbjct: 309 VDFETPEAAKAAVAANGTKEIDGRMVNLDLSN 340


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 517 CYDCGDRGHYARDC 558
           CY+CG+ GH AR+C
Sbjct: 19  CYNCGENGHQAREC 32



 Score = 29.9 bits (64), Expect = 0.71
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 517 CYDCGDRGHYARDC 558
           CY CG  GH ARDC
Sbjct: 118 CYACGSYGHQARDC 131



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 517 CYDCGDRGHYARDC 558
           CY CG  GH ARDC
Sbjct: 85  CYKCGRVGHIARDC 98



 Score = 28.3 bits (60), Expect = 2.2
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 517 CYDCGDRGHYARDC 558
           CY CG  GH  RDC
Sbjct: 60  CYACGTAGHLVRDC 73


>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 340 FAFVEFEAPRXAEAAVRGLDGRTXCGRXARVEMSN 444
           +AFVEF+ P  A+ A+  ++    C R  RV  +N
Sbjct: 48  YAFVEFDEPEDAKEAMENMNYSILCDRCIRVSPAN 82


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
 Frame = +1

Query: 274 LXAAFSXYGPLRHVWV-----ASNPPGFAFVEFEAPRXAEAAVRGLDGRTXCGRXARV 432
           L + F  +G L  V +      +NP GFA+++F     A  A   LD +   GR   V
Sbjct: 339 LKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHV 396



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 337 GFAFVEFEAPRXAEAAVRGLDGRTXCGRXARVEMSN 444
           GF FVEF+    A AA+  ++G    G    +++S+
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSH 701


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 322 ASNPPGFAFVEFEAPRXAEAAVRGLDGRTXCGRXARVE 435
           +  P G+ F E+  P  A +AVR L+      R  RV+
Sbjct: 42  SGQPKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRVD 79


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -3

Query: 331 DCLQPTHASVDHXMKRQLQVQVXXHDAPKXXTXTLQAPERDSGDD 197
           D      A++   +K+ +  +V   D PK    ++++PE    DD
Sbjct: 144 DAFHKDQATIPKKLKKDVDERVVSKDIPKLHRDSVESPESQDWDD 188


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 384 CGFSXPWSFEFNKCEAWRIA 325
           CG   PW+F F  C AW+IA
Sbjct: 164 CGQIIPWNFPFLMC-AWKIA 182


>SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -3

Query: 403 VHPNHVLRLQXPVELRIQQMRSLEDCLQPTHASVDHXMKRQL 278
           V PN +L+L+  V  R+ Q + + DCL   +++ +   ++ L
Sbjct: 147 VSPNDLLKLKQRVAQRLLQQKKIFDCLHLENSTSEGSAEKNL 188


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 274 LXAAFSXYGPLRHVWVASNPPGFAFVEFEAPRXAEAAVRGLDGR 405
           + A FS YG ++ +W+ S P   A V +E+   A  A   L  R
Sbjct: 16  IHALFSAYGNVKDIWMLS-PDNSAIVSYESLSSAIVARDALHNR 58


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 286 FSXYGPLRHVWVA--SNPPGFAFVEFEAPRXAEAAVRGLDGRTXCGRXARVE 435
           FS YG +    +   S  P FAF+ F++ + A AAV G        +  RVE
Sbjct: 386 FSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAVCGKTRSPHQKKPLRVE 437


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 407 VRPSKPRTAASAXRGASNSTNAKPGGLLATHTCL 306
           ++P+ PRT+ S+   AS ++  K  G L TH+ +
Sbjct: 155 LKPNIPRTSMSSSPTASRTSLRKGAGELETHSAV 188


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 517 CYDCGDRGHYARDC 558
           C  CG  GH ARDC
Sbjct: 336 CRHCGSIGHIARDC 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,653
Number of Sequences: 5004
Number of extensions: 38252
Number of successful extensions: 118
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 627537330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)