Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_H16
(1170 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 73 4e-13
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 73 4e-13
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 73 4e-13
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 56 4e-08
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 46 5e-05
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 46 5e-05
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 37 0.032
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 37 0.032
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 37 0.032
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 37 0.032
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 37 0.032
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 37 0.032
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 36 0.042
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 36 0.042
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 36 0.042
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 36 0.055
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 36 0.055
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 36 0.055
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 36 0.073
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 35 0.096
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 35 0.096
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 35 0.13
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 31 2.1
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 31 2.1
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 31 2.1
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 31 2.1
Z81056-8|CAB02907.2| 307|Caenorhabditis elegans Hypothetical pr... 30 2.7
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 30 3.6
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 30 3.6
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr... 29 6.3
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 29 6.3
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical... 29 6.3
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 29 8.4
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 29 8.4
AF016665-4|AAC71180.1| 347|Caenorhabditis elegans Nuclear hormo... 29 8.4
AF016654-7|AAB66029.2| 324|Caenorhabditis elegans Nuclear hormo... 29 8.4
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 72.9 bits (171), Expect = 4e-13
Identities = 37/72 (51%), Positives = 42/72 (58%)
Frame = +1
Query: 226 AKFXXGALGHHAXXPXLXAAFSXYGPLRHVWVASNPPGFAFVEFEAPRXAEAAVRGLDGR 405
AK G L A L F +G +R VWVA PPGFAFVE++ R AE AVR LDG
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 406 TXCGRXARVEMS 441
CG ARVE+S
Sbjct: 63 RICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 72.9 bits (171), Expect = 4e-13
Identities = 37/72 (51%), Positives = 42/72 (58%)
Frame = +1
Query: 226 AKFXXGALGHHAXXPXLXAAFSXYGPLRHVWVASNPPGFAFVEFEAPRXAEAAVRGLDGR 405
AK G L A L F +G +R VWVA PPGFAFVE++ R AE AVR LDG
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 406 TXCGRXARVEMS 441
CG ARVE+S
Sbjct: 63 RICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 72.9 bits (171), Expect = 4e-13
Identities = 37/72 (51%), Positives = 42/72 (58%)
Frame = +1
Query: 226 AKFXXGALGHHAXXPXLXAAFSXYGPLRHVWVASNPPGFAFVEFEAPRXAEAAVRGLDGR 405
AK G L A L F +G +R VWVA PPGFAFVE++ R AE AVR LDG
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 406 TXCGRXARVEMS 441
CG ARVE+S
Sbjct: 63 RICGVRARVELS 74
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 56.4 bits (130), Expect = 4e-08
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +1
Query: 274 LXAAFSXYGPLRHVWVASNPPGFAFVEFEAPRXAEAAVRGLDGRTXCGRXARVEM 438
+ A FS GP++ +W+A PPGFAFV F+ A AV+ L+G+ C A+VEM
Sbjct: 44 IEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTVHAFDAVKYLNGKKICDLEAKVEM 98
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 46.0 bits (104), Expect = 5e-05
Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 286 FSXYGPLRHVWVASNP-PGFAFVEFEAPRXAEAAVRGLDGRTXCGRXARVEMS 441
F YG +++V + S P FAFVEFE R AE AVR DG GR RVE +
Sbjct: 29 FHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT 81
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 46.0 bits (104), Expect = 5e-05
Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 286 FSXYGPLRHVWVASNP-PGFAFVEFEAPRXAEAAVRGLDGRTXCGRXARVEMS 441
F YG +++V + S P FAFVEFE R AE AVR DG GR RVE +
Sbjct: 29 FHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT 81
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 36.7 bits (81), Expect = 0.032
Identities = 23/65 (35%), Positives = 32/65 (49%)
Frame = +1
Query: 241 GALGHHAXXPXLXAAFSXYGPLRHVWVASNPPGFAFVEFEAPRXAEAAVRGLDGRTXCGR 420
G L + A + F YG L V + N GF FV+F+ R A+ AV L+G+ CG
Sbjct: 7 GRLPNRASDRDVEHFFRGYGKLSDV-IMKN--GFGFVDFQDQRDADDAVHDLNGKELCGE 63
Query: 421 XARVE 435
+E
Sbjct: 64 RVILE 68
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 36.7 bits (81), Expect = 0.032
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 241 GALGHHAXXPXLXAAFSXYGPLRHVWVASNPPGFAFVEFEAPRXAEAAVRGLDGRTXCGR 420
G + ++A + YG + ++ S GFAFV+FE R AE A LDG+T G
Sbjct: 7 GKIPYNARERDVERFLKGYGKINNI---SMKYGFAFVDFEDSRDAEDACHDLDGKTMEGS 63
Query: 421 XAR--VEMS 441
R VEM+
Sbjct: 64 SMRLVVEMA 72
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 36.7 bits (81), Expect = 0.032
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 241 GALGHHAXXPXLXAAFSXYGPLRHVWVASNPPGFAFVEFEAPRXAEAAVRGLDGRTXCGR 420
G + ++A + YG + ++ S GFAFV+FE R AE A LDG+T G
Sbjct: 7 GKIPYNARERDVERFLKGYGKINNI---SMKYGFAFVDFEDSRDAEDACHDLDGKTMEGS 63
Query: 421 XAR--VEMS 441
R VEM+
Sbjct: 64 SMRLVVEMA 72
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 36.7 bits (81), Expect = 0.032
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 241 GALGHHAXXPXLXAAFSXYGPLRHVWVASNPPGFAFVEFEAPRXAEAAVRGLDGRTXCGR 420
G + ++A + YG + ++ S GFAFV+FE R AE A LDG+T G
Sbjct: 7 GKIPYNARERDVERFLKGYGKINNI---SMKYGFAFVDFEDSRDAEDACHDLDGKTMEGS 63
Query: 421 XAR--VEMS 441
R VEM+
Sbjct: 64 SMRLVVEMA 72
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 36.7 bits (81), Expect = 0.032
Identities = 25/86 (29%), Positives = 36/86 (41%)
Frame = +1
Query: 184 PSKXHRPRCHALVPAKFXXGALGHHAXXPXLXAAFSXYGPLRHVWVASNPPGFAFVEFEA 363
P K RC V G L + L FS +G + +++ GFAF+ +
Sbjct: 108 PKKKFTGRCRLFV------GNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFLRLDT 159
Query: 364 PRXAEAAVRGLDGRTXCGRXARVEMS 441
AE+A +DGR GR RV +
Sbjct: 160 RAHAESAKEAIDGRIIHGRQVRVRFA 185
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 36.7 bits (81), Expect = 0.032
Identities = 25/86 (29%), Positives = 36/86 (41%)
Frame = +1
Query: 184 PSKXHRPRCHALVPAKFXXGALGHHAXXPXLXAAFSXYGPLRHVWVASNPPGFAFVEFEA 363
P K RC V G L + L FS +G + +++ GFAF+ +
Sbjct: 108 PKKKFTGRCRLFV------GNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFLRLDT 159
Query: 364 PRXAEAAVRGLDGRTXCGRXARVEMS 441
AE+A +DGR GR RV +
Sbjct: 160 RAHAESAKEAIDGRIIHGRQVRVRFA 185
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 36.3 bits (80), Expect = 0.042
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +1
Query: 220 VPAKFXXGALGHHAXXPXLXAAFSXYGPLRHVWVASNPPG-----FAFVEFEAPRXAEAA 384
+ ++ G++ L AF +GP++ + ++ +P FAFVE+E P A A
Sbjct: 100 IMSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLA 159
Query: 385 VRGLDGRTXCGRXARV 432
++G+ GR +V
Sbjct: 160 QESMNGQMLGGRNLKV 175
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 36.3 bits (80), Expect = 0.042
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +1
Query: 220 VPAKFXXGALGHHAXXPXLXAAFSXYGPLRHVWVASNPPG-----FAFVEFEAPRXAEAA 384
+ ++ G++ L AF +GP++ + ++ +P FAFVE+E P A A
Sbjct: 100 IMSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLA 159
Query: 385 VRGLDGRTXCGRXARV 432
++G+ GR +V
Sbjct: 160 QESMNGQMLGGRNLKV 175
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 36.3 bits (80), Expect = 0.042
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +1
Query: 220 VPAKFXXGALGHHAXXPXLXAAFSXYGPLRHVWVASNPPG-----FAFVEFEAPRXAEAA 384
+ ++ G++ L AF +GP++ + ++ +P FAFVE+E P A A
Sbjct: 100 IMSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLA 159
Query: 385 VRGLDGRTXCGRXARV 432
++G+ GR +V
Sbjct: 160 QESMNGQMLGGRNLKV 175
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 35.9 bits (79), Expect = 0.055
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = +1
Query: 226 AKFXXGALGHHAXXPXLXAAFSXYGPLRHVWVASNPPGFAFVEFEAPRXAEAAVRGLDGR 405
A+ G L + F YG +R V + + GF FVEF+ R AE AV L+G+
Sbjct: 3 ARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN---GFGFVEFDDKRDAEDAVHDLNGK 59
Query: 406 TXCGRXARVEMS 441
G ++ S
Sbjct: 60 ELGGERVILDYS 71
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 35.9 bits (79), Expect = 0.055
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = +1
Query: 226 AKFXXGALGHHAXXPXLXAAFSXYGPLRHVWVASNPPGFAFVEFEAPRXAEAAVRGLDGR 405
A+ G L + F YG +R V + + GF FVEF+ R AE AV L+G+
Sbjct: 3 ARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN---GFGFVEFDDKRDAEDAVHDLNGK 59
Query: 406 TXCGRXARVEMS 441
G ++ S
Sbjct: 60 ELGGERVILDYS 71
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 35.9 bits (79), Expect = 0.055
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = +1
Query: 226 AKFXXGALGHHAXXPXLXAAFSXYGPLRHVWVASNPPGFAFVEFEAPRXAEAAVRGLDGR 405
A+ G L + F YG +R V + + GF FVEF+ R AE AV L+G+
Sbjct: 3 ARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN---GFGFVEFDDKRDAEDAVHDLNGK 59
Query: 406 TXCGRXARVEMS 441
G ++ S
Sbjct: 60 ELGGERVILDYS 71
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 35.5 bits (78), Expect = 0.073
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +1
Query: 517 CYDCGDRGHYARDC 558
CY+CG RGHY+RDC
Sbjct: 69 CYNCGGRGHYSRDC 82
Score = 29.5 bits (63), Expect = 4.8
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +1
Query: 517 CYDCGDRGHYARDC 558
CY+C + GH++RDC
Sbjct: 37 CYNCQETGHFSRDC 50
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 35.1 bits (77), Expect = 0.096
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +1
Query: 286 FSXYGPLRHVWVASN-----PPGFAFVEFEAPRXAEAAVRGLDGRTXCGRXARVEMSN 444
FS G + +V + + P GFAF+EF A+ AV ++G GR RV ++N
Sbjct: 25 FSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLAN 82
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 35.1 bits (77), Expect = 0.096
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = +1
Query: 331 PPGFAFVEFEAPRXAEAAVRGLDGRTXCGRXARVEMSN 444
P GFAFVEF A+ AV L+G GR RV +N
Sbjct: 46 PRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYAN 83
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 34.7 bits (76), Expect = 0.13
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 331 PPGFAFVEFEAPRXAEAAVRGLDGRTXCGRXARVE 435
P G+ F+EF + AE A+R L+G GR RV+
Sbjct: 58 PKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVD 92
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 31.5 bits (68), Expect = 1.2
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 325 SNPPGFAFVEFEAPRXAEAAVRGLDGRTXCGRXARVE 435
+N G+ FV+FE+P+ A AAV GL+ + A+++
Sbjct: 145 NNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQ 181
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 31.5 bits (68), Expect = 1.2
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 325 SNPPGFAFVEFEAPRXAEAAVRGLDGRTXCGRXARVE 435
+N G+ FV+FE+P+ A AAV GL+ + A+++
Sbjct: 119 NNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQ 155
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 30.7 bits (66), Expect = 2.1
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 331 PPGFAFVEFEAPRXAEAAVRGLDGRTXCGRXARVEMS 441
P GFAFVEF A+ AV +G GR RV ++
Sbjct: 44 PRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLA 80
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 30.7 bits (66), Expect = 2.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 517 CYDCGDRGHYARDC 558
CY CG++GHYA C
Sbjct: 252 CYKCGEKGHYANRC 265
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 30.7 bits (66), Expect = 2.1
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +1
Query: 247 LGHHAXXPXLXAAFSXYGPLRHVWV-----ASNPPGFAFVEFEAPRXAEAAVRGLDGRTX 411
L + L F YG + V + + GF FV F R AE A+ DG+
Sbjct: 26 LSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLV 85
Query: 412 CGRXARVEMS 441
GR RV ++
Sbjct: 86 DGRELRVTLA 95
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 30.7 bits (66), Expect = 2.1
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +1
Query: 247 LGHHAXXPXLXAAFSXYGPLRHVWV-----ASNPPGFAFVEFEAPRXAEAAVRGLDGRTX 411
L + L F YG + V + + GF FV F R AE A+ DG+
Sbjct: 26 LSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLV 85
Query: 412 CGRXARVEMS 441
GR RV ++
Sbjct: 86 DGRELRVTLA 95
>Z81056-8|CAB02907.2| 307|Caenorhabditis elegans Hypothetical
protein F09F3.12 protein.
Length = 307
Score = 30.3 bits (65), Expect = 2.7
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -3
Query: 868 IYINSMWFQSICWTYNFSSI 809
IY +S+WFQ C T++F+SI
Sbjct: 245 IYPDSIWFQFFCLTFSFASI 264
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 29.9 bits (64), Expect = 3.6
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Frame = +1
Query: 286 FSXYGPLRHVWVASNPP-----GFAFVEFEAPRXAEAAVRGLDGRTXCGRXARV 432
F YG + V V + GFA VEF P A AA LDG GR +
Sbjct: 299 FKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFKGRMMHI 352
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 29.9 bits (64), Expect = 3.6
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Frame = +1
Query: 187 SKXHRPRCHALVPAK-FXXGALGHHAXXPXLXAAFSXYGPLRHVWVASNP------PGFA 345
S P + PAK L + L FS YG +++V + + G+
Sbjct: 119 SPRRSPAARSASPAKRVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYG 178
Query: 346 FVEFEAPRXAEAAVRGLDGRTXCGRXARVEMS 441
+VE++ AE +++ +DG G VEM+
Sbjct: 179 YVEYDNLEDAEKSIKHMDGGQIDGMAVHVEMT 210
>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical protein
Y6B3B.1 protein.
Length = 1829
Score = 29.1 bits (62), Expect = 6.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 556 SHERSVLCRRSRNNDHHTAEEADANEVVDPGCHNRDPH*TFL 431
SHE + CRR DHH ++++ + ++D + R P FL
Sbjct: 1638 SHEAAQACRRCSEADHHPSDDSIIDLMIDTS-NPRSPPMPFL 1678
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 29.1 bits (62), Expect = 6.3
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 286 FSXYGPLRHVWVASNPPGFAFVEFEAPRXAEAAVRGLD 399
FS + LR V N FAF+E+E+ +E A + LD
Sbjct: 163 FSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALD 200
>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
protein Y6B3B.1 protein.
Length = 1829
Score = 29.1 bits (62), Expect = 6.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 556 SHERSVLCRRSRNNDHHTAEEADANEVVDPGCHNRDPH*TFL 431
SHE + CRR DHH ++++ + ++D + R P FL
Sbjct: 1638 SHEAAQACRRCSEADHHPSDDSIIDLMIDTS-NPRSPPMPFL 1678
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 28.7 bits (61), Expect = 8.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 517 CYDCGDRGHYARDC 558
C +CG GH+A+DC
Sbjct: 641 CRNCGQEGHFAKDC 654
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 28.7 bits (61), Expect = 8.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 517 CYDCGDRGHYARDC 558
C +CG GH+A+DC
Sbjct: 641 CRNCGQEGHFAKDC 654
>AF016665-4|AAC71180.1| 347|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 75 protein.
Length = 347
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 601 YACGTSNDCVADDVNSHERSVLCRRSRNNDHHTAEEADANE 479
YAC +N+C S+ER +LCR R + A + NE
Sbjct: 76 YACSRNNNCAT----SYERKILCRACRYTNCLEAGMSRGNE 112
>AF016654-7|AAB66029.2| 324|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 72 protein.
Length = 324
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 601 YACGTSNDCVADDVNSHERSVLCRRSRNNDHHTAEEADANE 479
YAC +N+C S+ER +LCR R + A + NE
Sbjct: 41 YACSRNNNCAT----SYERKILCRACRYTNCLKAGMSRGNE 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,802,395
Number of Sequences: 27780
Number of extensions: 232845
Number of successful extensions: 666
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3192944148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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