Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_H15
         (1211 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    59   1e-09
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    41   4e-04
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    40   5e-04
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    40   0.001
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    35   0.026
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    35   0.026
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    30   0.56 
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    29   1.3  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    29   1.7  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    26   9.2  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +1

Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNC--PDGTKTCYVCGKPGHISRECDEARN 660
           GH AR C +G        CYNCN++GH +  C  P   KTCY CG  GH+ R+C  + N
Sbjct: 26  GHQARECTKGS------ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPN 78



 Score = 56.4 bits (130), Expect = 7e-09
 Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
 Frame = +1

Query: 490 GHIARNCPEGGRES--------ATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 645
           GHIAR+C   G++S        +   CY C   GH +R+C  G K CY CGK GH S EC
Sbjct: 92  GHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVK-CYSCGKIGHRSFEC 150

Query: 646 DEA 654
            +A
Sbjct: 151 QQA 153



 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 13/65 (20%)
 Frame = +1

Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNC-PDGTKT------------CYVCGKPGH 630
           GH+ R+CP          CY C + GHI+R+C  +G ++            CY CG  GH
Sbjct: 67  GHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGH 126

Query: 631 ISREC 645
            +R+C
Sbjct: 127 QARDC 131



 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISREC 645
           GH AR+C  G +      CY+C K GH S  C   +  + CY C +PGHI+  C
Sbjct: 125 GHQARDCTMGVK------CYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172



 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +1

Query: 544 CYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDE 651
           CYNC ++GH +R C  G+  CY C + GH + EC E
Sbjct: 19  CYNCGENGHQARECTKGS-ICYNCNQTGHKASECTE 53



 Score = 37.5 bits (83), Expect = 0.004
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +3

Query: 399 RCYXCNGTGHIARACAQSPDXPSCYNCNKXGPHRTE 506
           RCY C   GH AR C +      CYNCN+ G   +E
Sbjct: 18  RCYNCGENGHQARECTKG---SICYNCNQTGHKASE 50



 Score = 37.5 bits (83), Expect = 0.004
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 399 RCYXCNGTGHIARACAQSPDXPSCYNCNKXG 491
           +CY C   GH +  C Q+ D   CY CN+ G
Sbjct: 136 KCYSCGKIGHRSFECQQASDGQLCYKCNQPG 166



 Score = 36.7 bits (81), Expect = 0.006
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 402 CYXCNGTGHIARACAQSPDXPSCYNCNKXG 491
           CY CN TGH A  C +     +CY C   G
Sbjct: 38  CYNCNQTGHKASECTEPQQEKTCYACGTAG 67



 Score = 34.7 bits (76), Expect = 0.026
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
 Frame = +3

Query: 402 CYXCNGTGHIARACAQSPD---XPSCYNCNKXG 491
           CY C   GH+ R C  SP+      CY C + G
Sbjct: 60  CYACGTAGHLVRDCPSSPNPRQGAECYKCGRVG 92



 Score = 33.9 bits (74), Expect = 0.046
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
 Frame = +3

Query: 273 SRAHARRGAWCRGLPVSIGNV-RSASSATAQAXLRGLARKXADRCYXCNGTGHIARACAQ 449
           S  + R+GA C      +G++ R   +   Q+  R    +    CY C   GH AR C  
Sbjct: 75  SSPNPRQGAECYKCG-RVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTM 133

Query: 450 SPDXPSCYNCNKXGPHRTELSRGGAG 527
                 CY+C K G    E  +   G
Sbjct: 134 G---VKCYSCGKIGHRSFECQQASDG 156



 Score = 33.1 bits (72), Expect = 0.080
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 326 RQRAQCFKCNRTGXFARACKEXG 394
           RQ A+C+KC R G  AR C+  G
Sbjct: 80  RQGAECYKCGRVGHIARDCRTNG 102



 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 248 PSATGPGHFARACTQGGVVSRASGFNRQRAQCFKCNRTGXFARACKE 388
           P  T PG     C + G  +R      + + C+ CN+TG  A  C E
Sbjct: 10  PQTTRPGPRCYNCGENGHQAREC---TKGSICYNCNQTGHKASECTE 53



 Score = 27.1 bits (57), Expect = 5.2
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
 Frame = +2

Query: 266 GHFARACTQG------GVVSRASGFNRQRAQ----CFKCNRTGXFARAC 382
           GH AR CT G      G +   S F  Q+A     C+KCN+ G  A  C
Sbjct: 125 GHQARDCTMGVKCYSCGKIGHRS-FECQQASDGQLCYKCNQPGHIAVNC 172


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 490 GHIARNCPEGGRESATQTCYNCNK-SGHISRNCPDGTKTCYVCGKPGHISRECDEAR 657
           GHI+++CP          C  C     HIS  CP  TK C  CG  GHI+  C E R
Sbjct: 96  GHISKDCPH-------VLCTTCGAIDDHISVRCP-WTKKCMNCGLLGHIAARCSEPR 144



 Score = 37.5 bits (83), Expect = 0.004
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 517 GGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGK-PGHISREC 645
           G   S +  C+NC  +GHIS++CP     C  CG    HIS  C
Sbjct: 80  GSDPSESIVCHNCKGNGHISKDCPH--VLCTTCGAIDDHISVRC 121



 Score = 33.1 bits (72), Expect = 0.080
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
 Frame = +1

Query: 493 HIARNCPEGGRESATQTCYNCNKSGHISRNCPD----GTKTCYVCGKPGHISREC 645
           HI+  CP       T+ C NC   GHI+  C +    G + C  C    H S  C
Sbjct: 116 HISVRCPW------TKKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTC 164


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +1

Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNC----PDGTKTCYVCGKPGHISRECDE 651
           GHI ++CPE   +     C+ C    H    C    P     C++C + GH+S +C++
Sbjct: 86  GHIVQDCPEA--KDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQ 141



 Score = 35.5 bits (78), Expect = 0.015
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +1

Query: 544 CYNCNKSGHISRNCP---DGTKTCYVCGKPGHISRECDE 651
           C+ C + GHI ++CP   D    C+ CG   H    C +
Sbjct: 79  CFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSK 117



 Score = 28.7 bits (61), Expect = 1.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 598 KTCYVCGKPGHISRECDEARN 660
           K C+ C + GHI ++C EA++
Sbjct: 77  KFCFACRQQGHIVQDCPEAKD 97



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 399 RCYXCNGTGHIARACAQSP 455
           +C+ C+  GH++  C Q+P
Sbjct: 125 KCFICHENGHLSGQCEQNP 143


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +1

Query: 523 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEARN*PQPP 675
           R+   Q C NC   GH   +CP+         C  CG  GHI+R+C   R+  QPP
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC-PVRD-QQPP 357



 Score = 34.7 bits (76), Expect = 0.026
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP 588
           GH   +CPE    +    C +C   GHI+R+CP
Sbjct: 318 GHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 34.7 bits (76), Expect = 0.026
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 568  HISRNCPDGTKTCYVCGKPGHISREC 645
            H  + CP    TCY CGK  H  REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 34.7 bits (76), Expect = 0.026
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 568  HISRNCPDGTKTCYVCGKPGHISREC 645
            H  + CP    TCY CGK  H  REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = +1

Query: 505 NCPEGGRESATQTCYN----CNKSGHISRNCPDGTKTCYVC 615
           +CP+G  E  T  C+N    C  +G+IS   P       VC
Sbjct: 66  DCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 520  GRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKP 624
            GR+  T+ C NC + GH+  N     K C + G+P
Sbjct: 939  GRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = +1

Query: 505 NCPEGGRESATQTCYNCN-KSGHISRNCPDGTKTCYVCG 618
           N       + T TC NC  ++  + R  PDG   C  CG
Sbjct: 622 NTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACG 660


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 544 CYNCNKSGHISRNCPDGTKTCYVCGKP 624
           CY C + GH  + CP      Y  GKP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY-DGKP 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,132,477
Number of Sequences: 5004
Number of extensions: 54110
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 655427878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)