Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_H15
(1211 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 64 3e-10
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 53 5e-07
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 53 5e-07
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 53 5e-07
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 50 4e-06
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 50 4e-06
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 50 4e-06
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 46 7e-05
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 43 4e-04
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 43 4e-04
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 43 4e-04
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 43 4e-04
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 43 4e-04
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 43 4e-04
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 42 9e-04
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 42 9e-04
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 37 0.025
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 35 0.10
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 35 0.10
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 35 0.10
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 35 0.10
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 35 0.10
U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily ass... 32 0.94
U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical pr... 30 3.8
U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical pr... 30 3.8
U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical pr... 30 3.8
Z81071-6|CAB03010.1| 464|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 29 5.0
AC084159-15|AAK39353.1| 418|Caenorhabditis elegans Hypothetical... 29 5.0
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 29 6.6
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 29 6.6
Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr... 29 8.7
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr... 29 8.7
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 29 8.7
AL110477-14|CAB54336.2| 224|Caenorhabditis elegans Hypothetical... 29 8.7
AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical ... 29 8.7
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro... 29 8.7
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 29 8.7
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 63.7 bits (148), Expect = 3e-10
Identities = 33/75 (44%), Positives = 41/75 (54%), Gaps = 18/75 (24%)
Frame = +1
Query: 490 GHIARNCP----EGGRESAT--QTCYNCNKSGHISRNCPDGTK------------TCYVC 615
GHI+RNCP +GGR TCYNC ++GH SR+CP G +CY C
Sbjct: 13 GHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNC 72
Query: 616 GKPGHISRECDEARN 660
G GH SR+C AR+
Sbjct: 73 GGRGHYSRDCPSARS 87
Score = 57.6 bits (133), Expect = 2e-08
Identities = 25/51 (49%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +1
Query: 520 GRESATQTCYNCNKSGHISRNCPDG----TKTCYVCGKPGHISRECDEARN 660
GR Q CYNC +SGHISR C + K CY C + GHISR+C N
Sbjct: 101 GRSFGGQKCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDCPSQTN 151
Score = 54.0 bits (124), Expect = 2e-07
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 27/90 (30%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPD------------------- 591
GH +R+CP+GG + +CYNC GH SR+CP
Sbjct: 44 GHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRS 103
Query: 592 -GTKTCYVCGKPGHISRECDEARN*PQPPC 678
G + CY CG+ GHISREC E+ + + C
Sbjct: 104 FGGQKCYNCGRSGHISRECTESGSAEEKRC 133
Score = 48.0 bits (109), Expect = 1e-05
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 11/47 (23%)
Frame = +1
Query: 538 QTCYNCNKSGHISRNCPDGT-----------KTCYVCGKPGHISREC 645
+ CY C + GHISRNCP+G TCY C + GH SR+C
Sbjct: 4 RNCYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDC 50
Score = 36.3 bits (80), Expect = 0.044
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +3
Query: 291 RGAWCRGLPVSIGNVRSASSATAQAXLRGLARKXA-DRCYXCNGTGHIARACAQ--SPDX 461
RG + R P + RS + G R +CY C +GHI+R C + S +
Sbjct: 75 RGHYSRDCP----SARSEGGSGGYGGRGGEGRSFGGQKCYNCGRSGHISRECTESGSAEE 130
Query: 462 PSCYNCNKXG 491
CY C + G
Sbjct: 131 KRCYQCQETG 140
Score = 34.7 bits (76), Expect = 0.13
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Frame = +3
Query: 393 ADR-CYXCNGTGHIARACAQSPDX---------PSCYNCNKXGPHRTELSRGGAG 527
+DR CY C GHI+R C +CYNC + G + +GG+G
Sbjct: 2 SDRNCYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDCPKGGSG 56
Score = 33.1 bits (72), Expect = 0.41
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 263 PGHFARACTQGGVVSRASGFNRQRAQCFKCNRTGXFARACKEXG 394
PGH +R C G G + C+ C TG F+R C + G
Sbjct: 12 PGHISRNCPNGESDGGRRG-GGGGSTCYNCQETGHFSRDCPKGG 54
Score = 33.1 bits (72), Expect = 0.41
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 266 GHFARACTQGGVVSRASGFNRQRAQCFKCNRTGXFARAC 382
GHF+R C +GG G C+ C G ++R C
Sbjct: 44 GHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDC 82
Score = 29.5 bits (63), Expect = 5.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 266 GHFARACTQGGVVSRASGFNRQRAQCFKCNRTGXFARAC 382
GH +R CT+ G + + +C++C TG +R C
Sbjct: 116 GHISRECTESG--------SAEEKRCYQCQETGHISRDC 146
Score = 29.5 bits (63), Expect = 5.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 399 RCYXCNGTGHIARAC 443
RCY C TGHI+R C
Sbjct: 132 RCYQCQETGHISRDC 146
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 52.8 bits (121), Expect = 5e-07
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +1
Query: 517 GGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 645
GG E C+NC GH S CP+ + C+ CG+ GH S EC
Sbjct: 235 GGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 51.6 bits (118), Expect = 1e-06
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +1
Query: 517 GGRESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 657
GG E C+NC + GH S +CP+ K CY C +PGH SREC E R
Sbjct: 152 GGGER-NNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
Score = 44.0 bits (99), Expect(2) = 1e-05
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 600
GH + +CPE +E + CYNC + GH SR C + K
Sbjct: 167 GHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 34.3 bits (75), Expect = 0.18
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 600
GH + CPE R C+NC + GH S CP+ K
Sbjct: 251 GHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 282
Score = 33.9 bits (74), Expect = 0.23
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 399 RCYXCNGTGHIARACAQSPDXPSCYNCNKXGPHRT 503
+C+ C G GH + C + P C+NC + G HR+
Sbjct: 243 KCFNCKGEGHRSAECPEPP--RGCFNCGEQG-HRS 274
Score = 23.4 bits (48), Expect(2) = 1e-05
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 592 GTKTCYVCGKPGHISRECDE 651
G C+ C GH S EC E
Sbjct: 240 GPMKCFNCKGEGHRSAECPE 259
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 52.8 bits (121), Expect = 5e-07
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +1
Query: 517 GGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 645
GG E C+NC GH S CP+ + C+ CG+ GH S EC
Sbjct: 235 GGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 51.6 bits (118), Expect = 1e-06
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +1
Query: 517 GGRESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 657
GG E C+NC + GH S +CP+ K CY C +PGH SREC E R
Sbjct: 152 GGGER-NNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
Score = 44.0 bits (99), Expect(2) = 1e-05
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 600
GH + +CPE +E + CYNC + GH SR C + K
Sbjct: 167 GHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 34.3 bits (75), Expect = 0.18
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 600
GH + CPE R C+NC + GH S CP+ K
Sbjct: 251 GHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 282
Score = 33.9 bits (74), Expect = 0.23
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 399 RCYXCNGTGHIARACAQSPDXPSCYNCNKXGPHRT 503
+C+ C G GH + C + P C+NC + G HR+
Sbjct: 243 KCFNCKGEGHRSAECPEPP--RGCFNCGEQG-HRS 274
Score = 23.4 bits (48), Expect(2) = 1e-05
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 592 GTKTCYVCGKPGHISRECDE 651
G C+ C GH S EC E
Sbjct: 240 GPMKCFNCKGEGHRSAECPE 259
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 52.8 bits (121), Expect = 5e-07
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +1
Query: 517 GGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 645
GG E C+NC GH S CP+ + C+ CG+ GH S EC
Sbjct: 235 GGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 51.6 bits (118), Expect = 1e-06
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +1
Query: 517 GGRESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 657
GG E C+NC + GH S +CP+ K CY C +PGH SREC E R
Sbjct: 152 GGGER-NNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
Score = 44.0 bits (99), Expect(2) = 1e-05
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 600
GH + +CPE +E + CYNC + GH SR C + K
Sbjct: 167 GHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 34.3 bits (75), Expect = 0.18
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 600
GH + CPE R C+NC + GH S CP+ K
Sbjct: 251 GHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 282
Score = 33.9 bits (74), Expect = 0.23
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 399 RCYXCNGTGHIARACAQSPDXPSCYNCNKXGPHRT 503
+C+ C G GH + C + P C+NC + G HR+
Sbjct: 243 KCFNCKGEGHRSAECPEPP--RGCFNCGEQG-HRS 274
Score = 23.4 bits (48), Expect(2) = 1e-05
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 592 GTKTCYVCGKPGHISRECDE 651
G C+ C GH S EC E
Sbjct: 240 GPMKCFNCKGEGHRSAECPE 259
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 49.6 bits (113), Expect = 4e-06
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 523 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 657
R C+NC + GH S +CP+ K CY C +PGH SR+C E R
Sbjct: 252 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 49.6 bits (113), Expect = 4e-06
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 523 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 657
R C+NC + GH S +CP+ K CY C +PGH SR+C E R
Sbjct: 366 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 48.0 bits (109), Expect = 1e-05
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 526 ESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 645
E C+NC GH S CP+ + C+ CG+ GH S EC
Sbjct: 449 ERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 47.2 bits (107), Expect = 2e-05
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 600
GH + +CPE +E + CYNC + GH SR+CP+ K
Sbjct: 266 GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 47.2 bits (107), Expect = 2e-05
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 600
GH + +CPE +E + CYNC + GH SR+CP+ K
Sbjct: 380 GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 34.3 bits (75), Expect = 0.18
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 600
GH + CPE R C+NC + GH S CP+ K
Sbjct: 462 GHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 493
Score = 33.9 bits (74), Expect = 0.23
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 399 RCYXCNGTGHIARACAQSPDXPSCYNCNKXGPHRT 503
+C+ C G GH + C + P C+NC + G HR+
Sbjct: 454 KCFNCKGEGHRSAECPEPP--RGCFNCGEQG-HRS 485
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 49.6 bits (113), Expect = 4e-06
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 523 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 657
R C+NC + GH S +CP+ K CY C +PGH SR+C E R
Sbjct: 252 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 49.6 bits (113), Expect = 4e-06
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 523 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 657
R C+NC + GH S +CP+ K CY C +PGH SR+C E R
Sbjct: 366 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 48.0 bits (109), Expect = 1e-05
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 526 ESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 645
E C+NC GH S CP+ + C+ CG+ GH S EC
Sbjct: 449 ERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 47.2 bits (107), Expect = 2e-05
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 600
GH + +CPE +E + CYNC + GH SR+CP+ K
Sbjct: 266 GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 47.2 bits (107), Expect = 2e-05
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 600
GH + +CPE +E + CYNC + GH SR+CP+ K
Sbjct: 380 GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 34.3 bits (75), Expect = 0.18
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 600
GH + CPE R C+NC + GH S CP+ K
Sbjct: 462 GHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 493
Score = 33.9 bits (74), Expect = 0.23
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 399 RCYXCNGTGHIARACAQSPDXPSCYNCNKXGPHRT 503
+C+ C G GH + C + P C+NC + G HR+
Sbjct: 454 KCFNCKGEGHRSAECPEPP--RGCFNCGEQG-HRS 485
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 49.6 bits (113), Expect = 4e-06
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 523 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 657
R C+NC + GH S +CP+ K CY C +PGH SR+C E R
Sbjct: 252 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 49.6 bits (113), Expect = 4e-06
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 523 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 657
R C+NC + GH S +CP+ K CY C +PGH SR+C E R
Sbjct: 366 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 48.0 bits (109), Expect = 1e-05
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 526 ESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 645
E C+NC GH S CP+ + C+ CG+ GH S EC
Sbjct: 449 ERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 47.2 bits (107), Expect = 2e-05
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 600
GH + +CPE +E + CYNC + GH SR+CP+ K
Sbjct: 266 GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 47.2 bits (107), Expect = 2e-05
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 600
GH + +CPE +E + CYNC + GH SR+CP+ K
Sbjct: 380 GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 34.3 bits (75), Expect = 0.18
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 600
GH + CPE R C+NC + GH S CP+ K
Sbjct: 462 GHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 493
Score = 33.9 bits (74), Expect = 0.23
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 399 RCYXCNGTGHIARACAQSPDXPSCYNCNKXGPHRT 503
+C+ C G GH + C + P C+NC + G HR+
Sbjct: 454 KCFNCKGEGHRSAECPEPP--RGCFNCGEQG-HRS 485
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 45.6 bits (103), Expect = 7e-05
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPD-GTK-----TCYVCGKPGHISRECDE 651
GH +CP+ S+ C+ C H C G K TC+VC + GHISR+C +
Sbjct: 238 GHRLADCPKRNSSSSDGVCFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVGHISRDCHQ 297
Query: 652 ARN 660
N
Sbjct: 298 NVN 300
Score = 40.3 bits (90), Expect = 0.003
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +1
Query: 493 HIARNCPEGGRESATQ-TCYNCNKSGHISRNC--------PDGTKTCYVCGKPGHISREC 645
H C + G + TC+ C + GHISR+C PDG C VCG H+ R+C
Sbjct: 264 HSIHECKKKGVKGFPYATCFVCKQVGHISRDCHQNVNGVYPDG-GCCNVCGANTHLRRDC 322
Query: 646 DE 651
E
Sbjct: 323 PE 324
Score = 30.3 bits (65), Expect = 2.9
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = +1
Query: 544 CYNCNKSGHISRNCPDGTKT-----CYVCGKPGHISREC 645
C++C + GH +CP + C+ CG H EC
Sbjct: 231 CFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHEC 269
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 43.2 bits (97), Expect = 4e-04
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +1
Query: 511 PEGGRESATQTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRECDEARN*PQP 672
P G +++ + C+ C K + H +++CP+ K CY CG H+S C E R +P
Sbjct: 102 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 159
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 43.2 bits (97), Expect = 4e-04
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +1
Query: 511 PEGGRESATQTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRECDEARN*PQP 672
P G +++ + C+ C K + H +++CP+ K CY CG H+S C E R +P
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 43.2 bits (97), Expect = 4e-04
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +1
Query: 511 PEGGRESATQTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRECDEARN*PQP 672
P G +++ + C+ C K + H +++CP+ K CY CG H+S C E R +P
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 43.2 bits (97), Expect = 4e-04
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +1
Query: 511 PEGGRESATQTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRECDEARN*PQP 672
P G +++ + C+ C K + H +++CP+ K CY CG H+S C E R +P
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 43.2 bits (97), Expect = 4e-04
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 535 TQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDE-ARN*PQPP 675
+ TC+NC K GH + C + C CG P H + EC ++N Q P
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNGVQEP 248
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 43.2 bits (97), Expect = 4e-04
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 535 TQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDE-ARN*PQPP 675
+ TC+NC K GH + C + C CG P H + EC ++N Q P
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNGVQEP 248
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 41.9 bits (94), Expect = 9e-04
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +1
Query: 544 CYNCNKSGHISRNCPDGTKT----CYVCGKPGHISRECDEARN*PQPPC 678
C+NC + GHIS+ C D K C C + GH + +CD+ R P+ PC
Sbjct: 572 CHNCGEEGHISKEC-DKPKVPRFPCRNCEQLGHFASDCDQPRV-PRGPC 618
Score = 37.5 bits (83), Expect = 0.019
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKT----CYVCGKPGHISREC--DE 651
GH A +C + C NC GH + +C D K C CG+ GH +++C +
Sbjct: 602 GHFASDCDQP--RVPRGPCRNCGIEGHFAVDC-DQPKVPRGPCRNCGQEGHFAKDCQNER 658
Query: 652 ARN*PQPPC 678
R P PC
Sbjct: 659 VRMEPTEPC 667
Score = 35.5 bits (78), Expect = 0.076
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 604 CYVCGKPGHISRECDEARN*PQPPCLPYNQL 696
C+ CG+ GHIS+ECD+ + P+ PC QL
Sbjct: 572 CHNCGEEGHISKECDKPKV-PRFPCRNCEQL 601
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP------DGTKTCYVCGKPGHISREC 645
GH A +C + + C NC + GH +++C + T+ C C + GH EC
Sbjct: 625 GHFAVDCDQP--KVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680
Score = 31.1 bits (67), Expect = 1.6
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 490 GHIARNCP-EGGRESATQTCYNCNKSGHISRNCPDGTK 600
GH A++C E R T+ C C + GH CP K
Sbjct: 648 GHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPTRPK 685
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 41.9 bits (94), Expect = 9e-04
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +1
Query: 544 CYNCNKSGHISRNCPDGTKT----CYVCGKPGHISRECDEARN*PQPPC 678
C+NC + GHIS+ C D K C C + GH + +CD+ R P+ PC
Sbjct: 572 CHNCGEEGHISKEC-DKPKVPRFPCRNCEQLGHFASDCDQPRV-PRGPC 618
Score = 37.5 bits (83), Expect = 0.019
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKT----CYVCGKPGHISREC--DE 651
GH A +C + C NC GH + +C D K C CG+ GH +++C +
Sbjct: 602 GHFASDCDQP--RVPRGPCRNCGIEGHFAVDC-DQPKVPRGPCRNCGQEGHFAKDCQNER 658
Query: 652 ARN*PQPPC 678
R P PC
Sbjct: 659 VRMEPTEPC 667
Score = 35.5 bits (78), Expect = 0.076
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 604 CYVCGKPGHISRECDEARN*PQPPCLPYNQL 696
C+ CG+ GHIS+ECD+ + P+ PC QL
Sbjct: 572 CHNCGEEGHISKECDKPKV-PRFPCRNCEQL 601
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Frame = +1
Query: 490 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP------DGTKTCYVCGKPGHISREC 645
GH A +C + + C NC + GH +++C + T+ C C + GH EC
Sbjct: 625 GHFAVDCDQP--KVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680
Score = 31.1 bits (67), Expect = 1.6
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 490 GHIARNCP-EGGRESATQTCYNCNKSGHISRNCPDGTK 600
GH A++C E R T+ C C + GH CP K
Sbjct: 648 GHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPTRPK 685
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 37.1 bits (82), Expect = 0.025
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 538 QTCYNCNKSGHISRNCPDG 594
+ CY C + GHISRNCP+G
Sbjct: 4 RNCYKCQQPGHISRNCPNG 22
Score = 31.1 bits (67), Expect = 1.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 598 KTCYVCGKPGHISREC 645
+ CY C +PGHISR C
Sbjct: 4 RNCYKCQQPGHISRNC 19
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 35.1 bits (77), Expect = 0.10
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 508 CPEGGRESATQTCYNCNKSG-HISRNCPDGTKTCYVCGKPGHISREC 645
C + +++A+Q C C +SG H++ + C+ C + GHI+ C
Sbjct: 644 CSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAWNC 690
Score = 30.7 bits (66), Expect = 2.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 538 QTCYNCNKSGHISRNCP 588
+ C+ CN+ GHI+ NCP
Sbjct: 675 RACFRCNEMGHIAWNCP 691
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 35.1 bits (77), Expect = 0.10
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 508 CPEGGRESATQTCYNCNKSG-HISRNCPDGTKTCYVCGKPGHISREC 645
C + +++A+Q C C +SG H++ + C+ C + GHI+ C
Sbjct: 547 CSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAWNC 593
Score = 30.7 bits (66), Expect = 2.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 538 QTCYNCNKSGHISRNCP 588
+ C+ CN+ GHI+ NCP
Sbjct: 578 RACFRCNEMGHIAWNCP 594
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 35.1 bits (77), Expect = 0.10
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 508 CPEGGRESATQTCYNCNKSG-HISRNCPDGTKTCYVCGKPGHISREC 645
C + +++A+Q C C +SG H++ + C+ C + GHI+ C
Sbjct: 558 CSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAWNC 604
Score = 30.7 bits (66), Expect = 2.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 538 QTCYNCNKSGHISRNCP 588
+ C+ CN+ GHI+ NCP
Sbjct: 589 RACFRCNEMGHIAWNCP 605
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 35.1 bits (77), Expect = 0.10
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = +1
Query: 544 CYNCNKSGHISRNCPDGTKT-----CYVCGKPGHISREC 645
C NC H S CPD C CG GHIS++C
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
Score = 29.9 bits (64), Expect = 3.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 493 HIARNCPEGGRESATQTCYNCNKSGHISRNC 585
H + CP+ + C NC GHIS++C
Sbjct: 438 HKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 35.1 bits (77), Expect = 0.10
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = +1
Query: 544 CYNCNKSGHISRNCPDGTKT-----CYVCGKPGHISREC 645
C NC H S CPD C CG GHIS++C
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
Score = 29.9 bits (64), Expect = 3.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 493 HIARNCPEGGRESATQTCYNCNKSGHISRNC 585
H + CP+ + C NC GHIS++C
Sbjct: 438 HKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
>U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform b protein.
Length = 868
Score = 31.9 bits (69), Expect = 0.94
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Frame = +3
Query: 498 RTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQDVL-RVRQARPHLARVRRGAELAAAT 674
RT L R G + ++V LP SR +DV+ + RQA P + RRG +++
Sbjct: 643 RTTLPRSGTAQWKNEYSDGEEVTEKLPVESRDWRDVINQQRQAAPGNSADRRGIAATSSS 702
Query: 675 LSPLQSTMYIMMPRTDDKQRTPRATHDNRLQYRCRAASAPQTEE 806
LS L S YI R +K+R + +Y A P E
Sbjct: 703 LSNLPS--YI--NRRMEKEREREIEYRRDREYSMPPADPPVITE 742
>U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical
protein C17H11.6c protein.
Length = 778
Score = 29.9 bits (64), Expect = 3.8
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 586 PD-GTKTCYVCGKPGHISRECDEAR 657
PD GT CY C + H ++ CDEAR
Sbjct: 198 PDCGTLFCYHCKREWHSNQTCDEAR 222
>U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical
protein C17H11.6b protein.
Length = 796
Score = 29.9 bits (64), Expect = 3.8
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 586 PD-GTKTCYVCGKPGHISRECDEAR 657
PD GT CY C + H ++ CDEAR
Sbjct: 198 PDCGTLFCYHCKREWHSNQTCDEAR 222
>U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical
protein C17H11.6a protein.
Length = 793
Score = 29.9 bits (64), Expect = 3.8
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 586 PD-GTKTCYVCGKPGHISRECDEAR 657
PD GT CY C + H ++ CDEAR
Sbjct: 198 PDCGTLFCYHCKREWHSNQTCDEAR 222
>Z81071-6|CAB03010.1| 464|Caenorhabditis elegans Hypothetical
protein F28F8.7 protein.
Length = 464
Score = 29.5 bits (63), Expect = 5.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 544 CYNCNKSGHISRNCPDGTKTCYVC 615
C NCNK+ PD TK C +C
Sbjct: 302 CQNCNKALKYYDPIPDDTKLCLIC 325
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 29.5 bits (63), Expect = 5.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 544 CYNCNKSGHISRNCP 588
C++C + GHISR CP
Sbjct: 170 CFHCQEHGHISRMCP 184
>AC084159-15|AAK39353.1| 418|Caenorhabditis elegans Hypothetical
protein Y73B3A.13 protein.
Length = 418
Score = 29.5 bits (63), Expect = 5.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 544 CYNCNKSGHISRNCPDGTKTCYVC 615
C NCNK+ PD TK C +C
Sbjct: 281 CQNCNKALKYYDPIPDDTKLCLIC 304
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 29.1 bits (62), Expect = 6.6
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +2
Query: 323 NRQRAQCFKCNRTGXFARACKEXG*PLLQX*RHGAHSARVRTE 451
N C+KC G +A C + L H AH R + E
Sbjct: 246 NLSDVTCYKCGEKGHYANRCHKGALAFLSNTAHLAHEQREKDE 288
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 29.1 bits (62), Expect = 6.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 544 CYNCNKSGHISRNCPDGT 597
CY C GH+S++CP +
Sbjct: 313 CYKCKVVGHVSKDCPQSS 330
>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical
protein F33C8.1b protein.
Length = 1234
Score = 28.7 bits (61), Expect = 8.7
Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 13/93 (13%)
Frame = -3
Query: 525 PPPLGTVPCDVARSCCSCNTTARPGSVRTRALCAPCRYXCSNGQPXSLQARAKXPVRLHL 346
P L C+ C SC + + G + C P C +G P L + K P R +
Sbjct: 656 PLRLALKTCEEQTDCVSCASKSGCGWCSSGEQCLPNEQECVDG-PGMLTSWEKCPQRNSV 714
Query: 345 ---------KHCARCRLKPEAR----DTTPPCV 286
+C CR+ P D PCV
Sbjct: 715 ATMRPCNMENNCGSCRISPHCTWYPIDKASPCV 747
>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
protein F33C8.1a protein.
Length = 1271
Score = 28.7 bits (61), Expect = 8.7
Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 13/93 (13%)
Frame = -3
Query: 525 PPPLGTVPCDVARSCCSCNTTARPGSVRTRALCAPCRYXCSNGQPXSLQARAKXPVRLHL 346
P L C+ C SC + + G + C P C +G P L + K P R +
Sbjct: 656 PLRLALKTCEEQTDCVSCASKSGCGWCSSGEQCLPNEQECVDG-PGMLTSWEKCPQRNSV 714
Query: 345 ---------KHCARCRLKPEAR----DTTPPCV 286
+C CR+ P D PCV
Sbjct: 715 ATMRPCNMENNCGSCRISPHCTWYPIDKASPCV 747
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 28.7 bits (61), Expect = 8.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 496 IARNCPEGGRESATQTCYNCNKSGHISRNCP 588
+ R C +G + Q C+ C++ GH +CP
Sbjct: 1342 LLRKCNQGSAPTDRQ-CHQCHRIGHFVESCP 1371
>AL110477-14|CAB54336.2| 224|Caenorhabditis elegans Hypothetical
protein Y113G7B.24 protein.
Length = 224
Score = 28.7 bits (61), Expect = 8.7
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Frame = +3
Query: 495 HRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQDVLRVRQARPHL---ARVRRGAELA 665
HR EL R G D LQ++ + +H+ R + + L + ++ E A
Sbjct: 80 HRVELQRIGFITSDYVRCRLQKIESNPHDAIDQHKK--RKEEGKSDLLSESEMKFAEEYA 137
Query: 666 AATLSPLQSTMYIMMPRTDDKQRTPRATHDNRLQY 770
A + Q T+ MP K PR HD+ + Y
Sbjct: 138 LAESNLFQKTVLEFMPAALKKMPVPRGDHDDVMVY 172
>AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical
protein Y38H6C.5 protein.
Length = 915
Score = 28.7 bits (61), Expect = 8.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 604 CYVCGKPGHISREC 645
CY CGK GH + EC
Sbjct: 411 CYYCGKRGHTANEC 424
>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
protein.
Length = 1329
Score = 28.7 bits (61), Expect = 8.7
Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 13/93 (13%)
Frame = -3
Query: 525 PPPLGTVPCDVARSCCSCNTTARPGSVRTRALCAPCRYXCSNGQPXSLQARAKXPVRLHL 346
P L C+ C SC + + G + C P C +G P L + K P R +
Sbjct: 656 PLRLALKTCEEQTDCVSCASKSGCGWCSSGEQCLPNEQECVDG-PGMLTSWEKCPQRNSV 714
Query: 345 ---------KHCARCRLKPEAR----DTTPPCV 286
+C CR+ P D PCV
Sbjct: 715 ATMRPCNMENNCGSCRISPHCTWYPIDKASPCV 747
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 28.7 bits (61), Expect = 8.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 523 RESATQTCYNCNKSGHISRNCP 588
RE C+ C + GHIS CP
Sbjct: 603 RERPPPQCFTCGEMGHISTYCP 624
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,812,650
Number of Sequences: 27780
Number of extensions: 371063
Number of successful extensions: 1430
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3339026560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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