Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_H14
(1159 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 29 0.93
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 29 1.6
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 27 3.7
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 24 4.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 6.5
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 27 6.5
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 8.7
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 26 8.7
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 29.5 bits (63), Expect = 0.93
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Frame = +3
Query: 294 MSDIITSCLQLQKNISTNRIVVKEINGCD-GSFI---VNCVISYCIKQN-SPLLIVSSHN 458
+S I +QL+KNI + V N D G ++ C+ ++ K +PL I
Sbjct: 1509 ISRIRYMAVQLEKNIRVVGLSVSVANARDLGEWLGTSPQCIFNFSPKDRPNPLTIHLQSF 1568
Query: 459 SITHYHNVGLRMNHNLFKS 515
SITH+ ++ L M+ +++S
Sbjct: 1569 SITHFPSLMLAMSKPIYRS 1587
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -1
Query: 928 LFPGYFIVK*PETSELNPEERFSTSTTVCALCDSXFAKQWLASSSITSL 782
+FP + K P + P RF T+T +C K W S ++++
Sbjct: 59 IFPPDYPFKPPAIRMITPSGRFQTNTRLCLSFSDFHPKSWNPSWMVSTI 107
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 702 LQEVNKFCSEIIEIAAKSKNPFVIFHCNDVMEDDANHCLANXLSHKAQ 845
++ V+K S I I + PF+ H ND+ + + + N L H Q
Sbjct: 323 VEYVSKKSSYAIFIPKDKRLPFITIHKNDLSDLSGENWIENILKHHDQ 370
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 24.2 bits (50), Expect(2) = 4.7
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +3
Query: 642 HDTVNIIFDGITHLLDLQYTLQEVNKFCSEIIEIAAKSKNPFVIFHC 782
HDTV I + + + Q+T +++ S ++++ + V F C
Sbjct: 274 HDTVETILEKVEFTIPKQFTPAILSQGTSSLLKLCLRKYLSVVNFKC 320
Score = 21.0 bits (42), Expect(2) = 4.7
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = +3
Query: 774 FHCNDVMEDDANHC 815
FHCN + D ++ C
Sbjct: 355 FHCNPDLYDSSDEC 368
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 6.5
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Frame = -1
Query: 862 STSTTVCALCDSXFAKQWLASSSITSLQ*NITKGFFDLAAISIISEQNLFTSCNVY*RSS 683
STS+ S L+SSS +S + + +++ S S TS + SS
Sbjct: 236 STSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSS 295
Query: 682 KCVIPSKIMLTVS*LRCISSIFFST--SMSN*SDSAYSIIFVNVASPKSK*SITPAS 518
P+ T+S SS F ST S S S S++S + +S S S +P+S
Sbjct: 296 SSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSS 352
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 398 LCYQLLY*AKQPSFDSILT*LNNSLPQCWFKNE 496
LC QL+ + P FD++ +N L C KN+
Sbjct: 16 LCSQLIENDRIPEFDNLYLDMNGILHNCTHKND 48
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 26.2 bits (55), Expect = 8.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 693 QYTLQEVNKFCSEIIE 740
QY L+ + FCSE++E
Sbjct: 1011 QYDLERIRSFCSEVVE 1026
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 8.7
Identities = 21/98 (21%), Positives = 41/98 (41%)
Frame = -1
Query: 895 ETSELNPEERFSTSTTVCALCDSXFAKQWLASSSITSLQ*NITKGFFDLAAISIISEQNL 716
E L+ + T VC S +K+ + S S+ + F A ++ +Q
Sbjct: 152 EILSLDELRSLARQTKVCGKSRSEISKEIIFLSKRQSVLHCNGQQFLSFDAFGVMHKQES 211
Query: 715 FTSCNVY*RSSKCVIPSKIMLTVS*LRCISSIFFSTSM 602
F + + CV P KI++ + I+ ++F +S+
Sbjct: 212 FLRKQLLYQCKSCVKPKKILVDL--FHRINIVYFRSSI 247
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,548,329
Number of Sequences: 5004
Number of extensions: 64342
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 619568602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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