Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_H14
         (1159 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35641-1|CAA84706.2|  863|Caenorhabditis elegans Hypothetical pr...    30   2.7  
U23517-9|AAB93334.2|  314|Caenorhabditis elegans Ubiquitin conju...    29   6.2  
Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical pr...    29   8.2  
Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical pr...    29   8.2  
Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical pr...    29   8.2  
Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical pr...    29   8.2  
AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like ...    29   8.2  

>Z35641-1|CAA84706.2|  863|Caenorhabditis elegans Hypothetical
           protein C38H2.1 protein.
          Length = 863

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 546 FGDATLTNIMEYAESDQL-LIDVLKKIEEMQRNHDTVNIIFDGITHLLDLQYTLQEV 713
           FG AT+TN  +   ++     D++K   EM   HD   ++    TH+  LQ  +Q +
Sbjct: 806 FGLATITNYHDVLITNNFDYTDMIKFFNEMAERHDCSRLLSSARTHVKCLQNLVQHL 862


>U23517-9|AAB93334.2|  314|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein6 protein.
          Length = 314

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -1

Query: 928 LFPGYFIVK*PETSELNPEERFSTSTTVCALCDSXFAKQWLASSSI 791
           +FP  + +K P    L P  RF  +  VC        + WL S SI
Sbjct: 63  IFPADYPMKPPNLILLTPNGRFELNKKVCLSISGYHPETWLPSWSI 108


>Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical protein
            T01G1.1c protein.
          Length = 1580

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 648  TVNIIFDGITHLLDLQYTLQEVNKFCSEIIEIAAKSKNPF 767
            T+  +FDG   L + +Y LQ +   C +   +AAK ++ F
Sbjct: 952  TIKQLFDGCDTLSEARYLLQHLFDLCIDKAALAAKVESEF 991


>Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical protein
            T01G1.1a protein.
          Length = 1605

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 648  TVNIIFDGITHLLDLQYTLQEVNKFCSEIIEIAAKSKNPF 767
            T+  +FDG   L + +Y LQ +   C +   +AAK ++ F
Sbjct: 952  TIKQLFDGCDTLSEARYLLQHLFDLCIDKAALAAKVESEF 991


>Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical protein
            T01G1.1c protein.
          Length = 1580

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 648  TVNIIFDGITHLLDLQYTLQEVNKFCSEIIEIAAKSKNPF 767
            T+  +FDG   L + +Y LQ +   C +   +AAK ++ F
Sbjct: 952  TIKQLFDGCDTLSEARYLLQHLFDLCIDKAALAAKVESEF 991


>Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical protein
            T01G1.1a protein.
          Length = 1605

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 648  TVNIIFDGITHLLDLQYTLQEVNKFCSEIIEIAAKSKNPF 767
            T+  +FDG   L + +Y LQ +   C +   +AAK ++ F
Sbjct: 952  TIKQLFDGCDTLSEARYLLQHLFDLCIDKAALAAKVESEF 991


>AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like
            protein KLP-12 protein.
          Length = 1609

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 648  TVNIIFDGITHLLDLQYTLQEVNKFCSEIIEIAAKSKNPF 767
            T+  +FDG   L + +Y LQ +   C +   +AAK ++ F
Sbjct: 956  TIKQLFDGCDTLSEARYLLQHLFDLCIDKAALAAKVESEF 995


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,625,227
Number of Sequences: 27780
Number of extensions: 359447
Number of successful extensions: 893
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3151206316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)