Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_H11
         (1217 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...   172   5e-43
AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical...    29   8.8  
AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like pro...    29   8.8  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score =  172 bits (418), Expect = 5e-43
 Identities = 83/122 (68%), Positives = 101/122 (82%)
 Frame = +3

Query: 150 MAAAVVSGKAIEQPQAXVSPXHRIRXTLTSRNVRSLEQVCADLINGAKXQKLRVKGPVRM 329
           MA A  + KAI       +  HRIR TLTS+NV+ LE+VCA LI+GAK + L VKGP+RM
Sbjct: 1   MAVAFKNEKAITD-----NSEHRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRM 55

Query: 330 PTKXLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTI 509
           PTK LRITTRKTPCGEGSKTWDRFQMRIHKR+I+LH+P+E+++QITSI+IEPGV++EVT 
Sbjct: 56  PTKVLRITTRKTPCGEGSKTWDRFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIEVTR 115

Query: 510 AD 515
           AD
Sbjct: 116 AD 117


>AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical
           protein Y113G7B.23 protein.
          Length = 789

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 116 SCFSRPXFNKQHGSRCSVRQSHRATPGXGL-PXPPHQXHSYF 238
           S +  P   +QH ++ +  Q+H   PG G  P PP Q   Y+
Sbjct: 649 SPYPPPQQQQQHQAQQAQSQAHYGPPGGGQGPPPPPQGQQYY 690


>AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like
           protein protein.
          Length = 789

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 116 SCFSRPXFNKQHGSRCSVRQSHRATPGXGL-PXPPHQXHSYF 238
           S +  P   +QH ++ +  Q+H   PG G  P PP Q   Y+
Sbjct: 649 SPYPPPQQQQQHQAQQAQSQAHYGPPGGGQGPPPPPQGQQYY 690


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,100,301
Number of Sequences: 27780
Number of extensions: 255307
Number of successful extensions: 512
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3359895476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)