Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_H06
(1153 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0102 - 826827-827411 63 5e-10
10_08_0647 - 19576672-19577259 58 1e-08
04_04_0826 - 28453018-28453284,28453286-28453594 44 2e-04
04_01_0609 + 7966263-7966366,7967945-7968706,7972607-7972851,797... 33 0.43
07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866 33 0.56
01_05_0552 - 23173106-23173184,23173266-23173411,23173543-231740... 32 0.98
04_01_0477 - 6221990-6223224,6227722-6228817 30 3.0
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 30 3.0
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093... 29 6.9
>03_01_0102 - 826827-827411
Length = 194
Score = 62.9 bits (146), Expect = 5e-10
Identities = 36/122 (29%), Positives = 61/122 (50%)
Frame = +1
Query: 247 PEFLYPDDSHMASTARRSNVALPIIGMSFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRT 426
PEFL+ ++S + N+ G+ +++G+ G GL R G K+R
Sbjct: 46 PEFLFQEESLAQRRSWGENLTY-YTGIGYLSGAVAGAAVGLRDAARNAE-PGDTAKIRAN 103
Query: 427 QVVNYVMKQGTTTGCTLGIIASFYSCIALGVTWLRDKEDTANTFIAASTTGIIYKSTSGL 606
+V+N G G TLG+I Y+ I G+ +RD++D N+ A TG ++++ +G
Sbjct: 104 RVLNSCGSNGRRMGNTLGVIGLLYAGIESGMVAVRDRDDWINSVTAGLGTGALFRAANGP 163
Query: 607 RS 612
RS
Sbjct: 164 RS 165
>10_08_0647 - 19576672-19577259
Length = 195
Score = 58.4 bits (135), Expect = 1e-08
Identities = 40/155 (25%), Positives = 70/155 (45%)
Frame = +1
Query: 148 GDXLNKNEQKNNQASANLSPYLNFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPIIGM 327
GD +K N +PY ++ Y PEFL+ ++S + N+ G+
Sbjct: 15 GDASGPGRRKYNPYHDLSTPY-SYQTLYDLPTSPEFLFQEESAAQRRSWGENLTY-YTGV 72
Query: 328 SFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASFYSCI 507
+++G+ G GL + A G K+R +V+N G G LG+I Y+ +
Sbjct: 73 GYLSGAVAGAALGL-RDAAAGAEPGDTAKIRANRVLNSCGGGGRRLGNRLGVIGLMYAGM 131
Query: 508 ALGVTWLRDKEDTANTFIAASTTGIIYKSTSGLRS 612
+ RD++D N+ A TG ++++ +G RS
Sbjct: 132 ESAMVAARDRDDWVNSVAAGLGTGALFRAANGPRS 166
>04_04_0826 - 28453018-28453284,28453286-28453594
Length = 191
Score = 44.4 bits (100), Expect = 2e-04
Identities = 34/134 (25%), Positives = 57/134 (42%)
Frame = +1
Query: 211 LNFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPIIGMSFMTGSGLGGMAGLYKGLRAT 390
++F Y PEFL+ +++ + ++ G ++ G G AGL +
Sbjct: 29 ISFRELYDLPTSPEFLFHEEALRSRRTCGEDLTF-YTGCGYLVGRAAGAAAGLKRAAEEA 87
Query: 391 TLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASFYSCIALGVTWLRDKEDTANTFIAAS 570
G+ K+R G G LG++A + I V LRD + ANT A
Sbjct: 88 E-RGESMKLRGQPRPQPCGSLGRAYGNRLGVVALLFVGIESTVGGLRDADGWANTVAAGI 146
Query: 571 TTGIIYKSTSGLRS 612
TG +Y++ +G R+
Sbjct: 147 GTGALYRAAAGPRA 160
>04_01_0609 +
7966263-7966366,7967945-7968706,7972607-7972851,
7976940-7977107,7977471-7977734,7977962-7978509
Length = 696
Score = 33.1 bits (72), Expect = 0.43
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = -2
Query: 633 GSCTKTH*TKTRCAFVNDTSG*GCYESVCCVFFVSKPSYPKGYA*VKRCNNSKCAACSRT 454
G+C H ++CA N TSG Y C ++ P P G V C N+ T
Sbjct: 332 GACHSNH---SKCA--NVTSGLDGYFCNCSEGYIGNPYIPDGCKDVNECENNSICGAGST 386
Query: 453 LLHNIINYLCPSHF 412
+ +Y C +F
Sbjct: 387 CKNTEGSYRCDCNF 400
>07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866
Length = 396
Score = 32.7 bits (71), Expect = 0.56
Identities = 45/161 (27%), Positives = 65/161 (40%), Gaps = 2/161 (1%)
Frame = +1
Query: 139 SIFGDXLNKNEQKNNQASANLSPYL-NFDPHYIPRMQPEFLYPDDSHMASTARRSNVALP 315
S+FG K E+K S S L +FD P E+ M + L
Sbjct: 186 SLFG---KKEEEKKASPSGGKSEMLESFDTPSTPIPTFEYNKKARPSMERDPCPDRI-LD 241
Query: 316 IIGMSFMTGSGLGGMAGLYKGLRATTLAGQ-VGKVRRTQVVNYVMKQGTTTGCTLGIIAS 492
IG SF G+ G KGLR + + G + ++ + G C L
Sbjct: 242 DIGASFGMGAVGGSFFHFVKGLRNSPSGARFAGGMEGVRMNAPRVAGGFAVWCGL----- 296
Query: 493 FYSCIALGVTWLRDKEDTANTFIAASTTGIIYKSTSGLRSM 615
F +C V+ +R KED N+ IA + TG I + GLR++
Sbjct: 297 FSACDCALVS-VRQKEDPYNSIIAGAATGGILAARQGLRAV 336
>01_05_0552 -
23173106-23173184,23173266-23173411,23173543-23174022,
23174106-23174161,23175538-23175637,23175708-23175765,
23176163-23176278,23176915-23176974,23177297-23177383,
23178250-23178341,23178409-23178587,23178946-23179087,
23179655-23179706,23180241-23180473,23180569-23180745,
23180882-23181044,23181242-23181392,23181493-23181574,
23182193-23182332,23182499-23183013
Length = 1035
Score = 31.9 bits (69), Expect = 0.98
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 688 SKAKYNRF*SNTCQEYIHNVMFVLGELCQRISW 786
S AKY RF N CQ+ + + VLG++ + +SW
Sbjct: 481 SHAKYYRFHVNECQQNSGDALKVLGKVSRTLSW 513
>04_01_0477 - 6221990-6223224,6227722-6228817
Length = 776
Score = 30.3 bits (65), Expect = 3.0
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 522 LASRQRR-HSKHFHSSLNHWYHLQKHIWSSFNGSWCSYR 635
LA RR H SL HWYH KH+ F+ + S+R
Sbjct: 212 LAGHSRRCRPAQLHGSLLHWYHSIKHMILVFDTTAESFR 250
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 30.3 bits (65), Expect = 3.0
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +1
Query: 193 ANLSPYLNFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPIIGMSFMTGSGLGGMAGLY 372
AN S Y + +PR F +PD S + RS V +P I +F G GG +
Sbjct: 174 ANGSRYDGVWENGVPRGTGVFTWPDGSRYVGSWPRSCVDMPAISGTFFPPVGAGGGGAVR 233
Query: 373 K 375
K
Sbjct: 234 K 234
>02_05_1197 -
34908382-34908582,34908664-34908837,34909239-34909337,
34909444-34909644,34910229-34910336,34910498-34910882,
34911132-34911584,34911868-34912094,34912211-34912270
Length = 635
Score = 29.1 bits (62), Expect = 6.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 103 NLVLQIKNETKMSIFGDXLNKNEQKNNQASANLSPYLNFDPH 228
+LVL +K+ + GD + EQ Q ++ PY F P+
Sbjct: 501 HLVLSCSYSSKVWLVGDGVTDEEQMKAQKGSHFVPYSQFPPN 542
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,153,968
Number of Sequences: 37544
Number of extensions: 420123
Number of successful extensions: 1177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3503158800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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