Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_H06
         (1153 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   8.9  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   8.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   8.9  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 245 NQSSYILMTVTWLRLQEDRTWLCPSS 322
           N ++Y+ +T+  + +     WL PSS
Sbjct: 246 NSTTYVTLTIVLMTMTLMTLWLEPSS 271


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 380 SPLYNPAIPPKPEPVIKDIPMMGR 309
           +P+Y    PP+P  V   +PM G+
Sbjct: 340 APVYYGNFPPRPIMVRPWVPMRGQ 363


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +1

Query: 673 NDNIWSKAKYNRF*SNTCQEYIHNVM 750
           N+N ++   YN   +N C++  +N++
Sbjct: 334 NNNNYNNNNYNNNYNNNCKKLYYNII 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,121
Number of Sequences: 438
Number of extensions: 4943
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39042324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)