Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_H05
(1188 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502... 33 0.44
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989... 31 1.3
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152... 31 1.3
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081... 31 2.3
08_02_1129 - 24513568-24514296,24515380-24515817 30 3.1
09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772... 30 4.1
04_04_0347 + 24564589-24565296 29 7.2
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 29 9.5
>01_01_0659 -
5021159-5021266,5021364-5021494,5021619-5021785,
5021950-5022065,5022226-5022381,5022570-5022678,
5023153-5023262,5023807-5023992,5024077-5024667
Length = 557
Score = 33.1 bits (72), Expect = 0.44
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 280 KFPSIINEGRVEGDKYQISIHLPGYEQKDINVK 378
K ++ E +VEGD Y + +H PG+ K ++V+
Sbjct: 216 KDDEVVKEEKVEGDGYSLGLHAPGFFDKVLHVE 248
>12_02_1052 -
25698263-25698394,25698587-25698679,25698945-25698995,
25699074-25699258,25699361-25699407,25699704-25699918
Length = 240
Score = 31.5 bits (68), Expect = 1.3
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +2
Query: 617 ATCGTLTSAWRQPRRPMRSRKL*KRPRTLSTSETMRSS 730
A C TS+ R+ RRPMR+ +R RT S++ T R S
Sbjct: 40 ACCTAATSSTRRSRRPMRASASSRRRRTPSSTWTPRPS 77
>11_06_0645 -
25814302-25814759,25814853-25815005,25815032-25815214,
25815342-25815531,25815624-25815784,25816136-25816623,
25817035-25817075
Length = 557
Score = 31.5 bits (68), Expect = 1.3
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Frame = +1
Query: 118 PRHSTTMARHIGRITITTP--FSPYVRESMLDTHSLWSNLANEMQHLDDMMKELSLKFPS 291
P+ S+T +G I P F P + L H WS L+ + H+ L F
Sbjct: 303 PQISSTYDGSVGLSDIGVPYRFQPDTLDKNLMHHGSWSFLS--IAHI--------LCF-- 350
Query: 292 IINEGRVEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLP 450
I ++G++EG + I H+P E D+ V + + + +S H K N P
Sbjct: 351 ISSKGQLEGIQVVIDPHVPSVESVDMPVSSMDNSTLEVFSSQQQHSFKCNNTP 403
>01_06_0556 + 30207124-30207581,30207692-30207901,30208016-30208100,
30208517-30208676,30208768-30208844,30208985-30209032,
30209504-30209594,30209703-30210004,30210214-30210495,
30210695-30211011,30211113-30211273,30211556-30211665,
30211752-30211902,30212438-30212578,30212688-30212857,
30213485-30213817,30213981-30214271,30214356-30214439,
30214620-30214753,30214946-30215173,30215273-30215444,
30215621-30215875,30215963-30216232
Length = 1509
Score = 30.7 bits (66), Expect = 2.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 683 TAFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTFVG 573
TA + +FW V +S+ LL ++ S+ + + FVG
Sbjct: 1263 TALMLGTIFWRVGHKMESSKDLLVIIGSMYAAVLFVG 1299
>08_02_1129 - 24513568-24514296,24515380-24515817
Length = 388
Score = 30.3 bits (65), Expect = 3.1
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -3
Query: 661 SSGLSPSRRQRPARCSRW*TPSLHDLHS*GSSQWALQLASC 539
+S +SP QR A CSRW PS L + + A+QL C
Sbjct: 259 ASAVSPPAEQRAACCSRWWVPSSLSLVASLALAAAVQLRVC 299
>09_04_0579 +
18676165-18676524,18676846-18677058,18677136-18677288,
18677503-18677622,18677696-18677782,18677876-18678313
Length = 456
Score = 29.9 bits (64), Expect = 4.1
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 539 ARGQLQSPLRRPLRM*VVKRWSSPPRATCGTLTSAWRQPRRPMR 670
A G+ P P V SS PR C LTS +R+P P R
Sbjct: 5 AVGEATPPPGGPPSRVSVSSSSSTPRRRCAALTSRFREPASPRR 48
>04_04_0347 + 24564589-24565296
Length = 235
Score = 29.1 bits (62), Expect = 7.2
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 75 MIALVLCGLLAAVSAAPQYYHGSSHWPY-HHYDP 173
M L+ LLAA SAA +H ++ PY HH+ P
Sbjct: 5 MSMLLASSLLAAASAARADHHSPAYAPYPHHHAP 38
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 28.7 bits (61), Expect = 9.5
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +1
Query: 187 VRESMLDTHSLWSNLANEMQHLDDMMKELSLKFPSIINEGRVEGDKYQIS 336
+++++L+ LA+E+Q D ++ EL K S + R+E + ++S
Sbjct: 1298 LKQTLLEKSGELEKLAHELQSKDSLLIELEAKIKSYADADRIEALESELS 1347
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,582,979
Number of Sequences: 37544
Number of extensions: 468276
Number of successful extensions: 1558
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1558
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3619931772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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