Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_H04
         (1170 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     28   0.16 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    26   0.48 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   1.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   1.1  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 0.16
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 476 SQYASLNIKRGVGLVASAGGPEKPRSVTTTSGKVTLEDLEG 598
           SQ A+LN       VASA GP +  S+++T  +  L +++G
Sbjct: 261 SQQAALNYSTLASAVASANGPSQDPSISST--ETLLRNIQG 299


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription factor
            protein.
          Length = 441

 Score = 26.2 bits (55), Expect = 0.48
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +2

Query: 878  YXSXXNTIXVMTAXRX--EYGRGXPXXMPPPES-SLGPPTDYYXPP 1006
            Y +   T+ + T  R   +  R  P  M  P+S SL PP   Y PP
Sbjct: 243  YPAVTATVQLSTCTRTTLKNNRASPYPMQRPKSASLSPPPHVYNPP 288


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -1

Query: 684 ISAPGLFQGLSSIVSILNSKAGTPLILPGPSKS 586
           IS+PG   GLSS    L S  G  ++LP PS S
Sbjct: 681 ISSPGALSGLSS----LTSPGG--MVLPSPSTS 707


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -1

Query: 684 ISAPGLFQGLSSIVSILNSKAGTPLILPGPSKS 586
           IS+PG   GLSS    L S  G  ++LP PS S
Sbjct: 573 ISSPGALSGLSS----LTSPGG--MVLPSPSTS 599


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,904
Number of Sequences: 336
Number of extensions: 5102
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 34125107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)