Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_H04
         (1170 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685...    58   1e-08
03_02_0762 - 10968888-10969466,10972522-10974175,10974277-109743...    50   5e-06
06_02_0237 + 13341469-13342259,13342839-13343223,13343314-133434...    32   0.76 
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994...    30   3.1  
12_01_1046 - 10756062-10756326,10757618-10757782,10757901-107582...    30   4.1  
07_03_1547 + 27623945-27625612                                         30   4.1  
11_01_0549 - 4354050-4354069,4354175-4354367                           29   9.4  

>03_05_0967 +
           29265465-29266214,29267718-29267944,29268428-29268557,
           29268651-29268719,29268803-29268946,29269775-29270011,
           29270897-29270998,29271131-29271396,29271766-29273410,
           29274449-29275018
          Length = 1379

 Score = 58.0 bits (134), Expect = 1e-08
 Identities = 23/49 (46%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
 Frame = +2

Query: 632 FNID---TIEDKPWNKPGADISDYFNYGFNEVTWSAYCERQRRMRINET 769
           F+ID   T E+KPW  PGADISD+FN+G ++  W  YC++  ++R+  T
Sbjct: 329 FDIDVDTTFEEKPWKYPGADISDFFNFGLDDEKWKDYCKQLDQLRLEST 377


>03_02_0762 -
           10968888-10969466,10972522-10974175,10974277-10974359,
           10974435-10974533,10974620-10974706,10974782-10974838,
           10974939-10975065,10975344-10975465,10975685-10975732,
           10975867-10976268
          Length = 1085

 Score = 49.6 bits (113), Expect = 5e-06
 Identities = 15/36 (41%), Positives = 26/36 (72%)
 Frame = +2

Query: 629 EFNIDTIEDKPWNKPGADISDYFNYGFNEVTWSAYC 736
           + +I+  ++KPW + G D++DYFN+G +E +W  YC
Sbjct: 195 DVDIEAFQEKPWRQHGVDLTDYFNFGLDEESWRKYC 230


>06_02_0237 +
           13341469-13342259,13342839-13343223,13343314-13343427,
           13343517-13344011
          Length = 594

 Score = 32.3 bits (70), Expect = 0.76
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +2

Query: 500 KRGVGLVASAGGPEKPRSVTTTSGKVTLEDLEGPGSINGVPA 625
           KR  G+ A+ G P  PRS  T   +V   + EG  +ING PA
Sbjct: 495 KRNTGVRATGGAPT-PRSYWTVLYEVAETEAEGQVNINGAPA 535


>12_02_0854 +
           23697826-23698033,23699111-23699276,23699430-23699466,
           23699531-23700145
          Length = 341

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 164 TAIETTPGDENDDNWLYGDSGGDANQESTEETQE 265
           T   +  G+++DD W   DSG +  +E  ++ +E
Sbjct: 34  TPTPSDDGEDSDDGWAVSDSGSEEEEEEYDDEEE 67


>12_01_1046 -
           10756062-10756326,10757618-10757782,10757901-10758206,
           10758279-10758377,10760555-10760670,10760756-10760848,
           10760946-10761107,10761784-10762170
          Length = 530

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 655 IFYSINIEFQSRNSINTSWPLQVL*CHFSTCCSY*TRFLRSPCRSYQANSPF 500
           +++ +NI    +      W L V+    ++CC+     L +PCRSY + S F
Sbjct: 276 VWWEMNIR---KERFEQEWDLAVVNALTASCCNVMVLGLLAPCRSYGSTSRF 324


>07_03_1547 + 27623945-27625612
          Length = 555

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 359 NAHHLIPNRYYLPLHLDFLRQHHRRRRPIFVLLEFPQW 246
           N +H   N   LPL   F+  +H RRR +FV+LE+  W
Sbjct: 225 NVYHEF-NDGILPL---FVTSNHLRRRVVFVILEYHDW 258


>11_01_0549 - 4354050-4354069,4354175-4354367
          Length = 70

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +2

Query: 506 GVGLVASAGGPEKPRSVTTTSGKVTLEDLEGPGSING 616
           G G V S GGP++ R VTTT G+ +     G GS+ G
Sbjct: 11  GCGSV-SGGGPQQRRGVTTTRGRRSA--TAGCGSVGG 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,799,784
Number of Sequences: 37544
Number of extensions: 601097
Number of successful extensions: 1771
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1762
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3573221976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)