Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_H04
         (1170 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical ...    85   9e-17
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr...    30   2.7  
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    29   6.3  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    29   6.3  
Z79639-4|CAB01917.2|  254|Caenorhabditis elegans Hypothetical pr...    29   8.4  

>AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical
           protein F32D1.9 protein.
          Length = 513

 Score = 85.0 bits (201), Expect = 9e-17
 Identities = 33/62 (53%), Positives = 45/62 (72%)
 Frame = +2

Query: 587 DLEGPGSINGVPALEFNIDTIEDKPWNKPGADISDYFNYGFNEVTWSAYCERQRRMRINE 766
           DL+   +IN  P  + ++  +ED+PW KPGADI+DYFNYGF E TW+ YCERQ+++RI  
Sbjct: 120 DLDTTATINDKPIYDLDLAQMEDRPWRKPGADITDYFNYGFTEETWNLYCERQKKLRIEF 179

Query: 767 TG 772
            G
Sbjct: 180 AG 181


>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
           protein D1044.6 protein.
          Length = 1009

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/25 (48%), Positives = 20/25 (80%)
 Frame = +3

Query: 252 RKLKKYKNRPTSSVVLTKKIKMKRK 326
           RK++K K RPT+  V+ KK++M++K
Sbjct: 309 RKIEKEKPRPTTENVVLKKVEMEKK 333


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
            protein R148.5b protein.
          Length = 505

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = +2

Query: 932  GRGXPXXM--PPPESSLGPPTDYYXPP 1006
            GRG P     PPP   +GPP  +  PP
Sbjct: 313  GRGMPPPFMPPPPHFGMGPPRGFMPPP 339


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
            protein R148.5a protein.
          Length = 528

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = +2

Query: 932  GRGXPXXM--PPPESSLGPPTDYYXPP 1006
            GRG P     PPP   +GPP  +  PP
Sbjct: 313  GRGMPPPFMPPPPHFGMGPPRGFMPPP 339


>Z79639-4|CAB01917.2|  254|Caenorhabditis elegans Hypothetical
           protein F54E4.3 protein.
          Length = 254

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 747 DECESTKQVWECIWDRFPV-HQC 812
           D+CE  K++ +CI D  PV HQC
Sbjct: 62  DQCEHLKELDKCIKDDLPVAHQC 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,429,336
Number of Sequences: 27780
Number of extensions: 502549
Number of successful extensions: 1388
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3192944148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)