Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_H03
(1647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.049
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.26
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.80
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 5.7
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 27 7.5
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 9.9
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.3 bits (75), Expect = 0.049
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = -1
Query: 1548 PPPPXXXGXXXPPPPPPXXXXXXXXXXXPPPXGXPPP 1438
PPP G PPPPPP PPP PPP
Sbjct: 752 PPPAPIMGGPPPPPPPP-----GVAGAGPPPPPPPPP 783
Score = 32.3 bits (70), Expect = 0.20
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Frame = -1
Query: 1548 PPPPXXXGXXXP--PPPPPXXXXXXXXXXXPPPXGXPPP 1438
PPPP G P PPPPP P P P P
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/56 (32%), Positives = 18/56 (32%), Gaps = 7/56 (12%)
Frame = -2
Query: 1547 PPPXXXXXXXPPP-----PPPPXXXXXXXXXXPPP--XGGXPPPXFXXXPXFXGGG 1401
PPP P P PPP PPP G PPP P GG
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/40 (32%), Positives = 13/40 (32%)
Frame = -2
Query: 1517 PPPPPPPXXXXXXXXXXPPPXGGXPPPXFXXXPXFXGGGG 1398
P PPP P PP G PP P GG
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/45 (28%), Positives = 15/45 (33%)
Frame = -1
Query: 1572 KKKKXXXXPPPPXXXGXXXPPPPPPXXXXXXXXXXXPPPXGXPPP 1438
++K PPPP P P P PP PPP
Sbjct: 724 QQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.26
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 1517 PPPPPPPXXXXXXXXXXPPPXGGXPPP 1437
PPPPPPP PP PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPP 363
Score = 30.3 bits (65), Expect = 0.80
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +1
Query: 1306 KKNPPXXFPPXKXXPXKKXXXXFXGKKXXPPPPPPXK 1416
KK PP PP + K PPPPPP +
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR 344
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 1381 KKXXPPPPPPXKXGXXKKXGGGXPPXGGG 1467
KK PPPPPP + G PP G G
Sbjct: 308 KKRPPPPPPP------SRRNRGKPPIGNG 330
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.80
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 1516 PPPPPPPXXXXXXXXXXPPPXG 1451
PPPPPPP PPP G
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPG 31
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -2
Query: 1517 PPPPPPPXXXXXXXXXXPPPXGG 1449
PPPPPPP PPP G
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPG 31
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 1547 PPPXXXXXXXPPPPPPP 1497
PPP PPPPPPP
Sbjct: 14 PPPGFEPPSQPPPPPPP 30
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 1548 PPPPXXXGXXXPPPPPP 1498
PPPP PPPPPP
Sbjct: 13 PPPPGFEPPSQPPPPPP 29
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Frame = -1
Query: 1548 PPPPXXXGXXXP--PPPPP 1498
PPPP G P PPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/58 (31%), Positives = 18/58 (31%)
Frame = +1
Query: 1372 FXGKKXXPPPPPPXKXGXXKKXGGGXPPXGGGXXXXXXXXXXGGGGGGGXXXXXXXGG 1545
F G PPP P G G G G G GG GG G GG
Sbjct: 193 FGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +3
Query: 1398 PPPPXKXXXPXKXXGGXPPXGGGXXXXXXXXXXGGGG 1508
PPPP P GG P G G G GG
Sbjct: 76 PPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMGGPGG 112
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +1
Query: 1402 PPPXKXGXXKKXGGGXPPXGGGXXXXXXXXXXGGGGGGGXXXXXXXGGGXXXXF 1563
P P G K G P G G G GG G GGG F
Sbjct: 117 PKPKTVGPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGF 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,273,284
Number of Sequences: 5004
Number of extensions: 54071
Number of successful extensions: 479
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 935586128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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