Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_H02
         (1160 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    23   5.8  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   7.7  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    22   7.7  

>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -3

Query: 213 RDALDVITQHLPVTFSAPLSKTFASFTATGHLDELLGLCFVLV 85
           R AL V T     T  +  +      +    +D  LG CFV+V
Sbjct: 99  RVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMV 141


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 9/37 (24%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 604 FQELFA-VVDVVNQSQVTLVRLIIIKFFVLEYKQTNK 711
           F ++F  ++ ++  +   L+ + + +  +LEYK+T K
Sbjct: 276 FHDIFLPLLCILTNTLEILITVTVCELTILEYKRTKK 312


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 9/37 (24%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 604 FQELFA-VVDVVNQSQVTLVRLIIIKFFVLEYKQTNK 711
           F ++F  ++ ++  +   L+ + + +  +LEYK+T K
Sbjct: 101 FHDIFLPLLCILTNTLEILITVTVCELTILEYKRTKK 137


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,180
Number of Sequences: 336
Number of extensions: 2629
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 33815816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)