Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_H01
         (1182 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   184   3e-47
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   183   5e-47
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    28   2.2  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    27   5.1  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  184 bits (447), Expect = 3e-47
 Identities = 84/148 (56%), Positives = 108/148 (72%)
 Frame = +2

Query: 125 KARGSNLRVHFKHTYEPAMAIRKXPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQ 304
           KARG+ LR HFK++ E A  I    L++A  +L NV E K+ +PFRRFNGGVGR AQ K+
Sbjct: 16  KARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKE 75

Query: 305 FGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGR 484
           FG TQ RWP KS +F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR
Sbjct: 76  FGVTQARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGR 135

Query: 485 INPYMSSPCHIEVCLSEREDAVARVAPT 568
           +  Y+SSP HIE+ ++E E+AV +   T
Sbjct: 136 VTAYLSSPSHIEIIVAEEEEAVPKANDT 163


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  183 bits (445), Expect = 5e-47
 Identities = 84/148 (56%), Positives = 107/148 (72%)
 Frame = +2

Query: 125 KARGSNLRVHFKHTYEPAMAIRKXPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQ 304
           KARG+ LR HFK++ E A  I    L++A  +L NV E K+ +PFRRFNGGVGR AQ K+
Sbjct: 16  KARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKE 75

Query: 305 FGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGR 484
           FG TQ RWP KS  F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR
Sbjct: 76  FGVTQARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGR 135

Query: 485 INPYMSSPCHIEVCLSEREDAVARVAPT 568
           +  Y+SSP HIE+ ++E E+AV +   T
Sbjct: 136 VTAYLSSPSHIEIIVAEEEEAVPKANDT 163


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 317 VLCQTALLEHSDQRRR*SDGMEYTLSFR 234
           ++C TA+L+H D  RR   G+ + L FR
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +1

Query: 430 SGKSRALPTQTYIPCSRS---HQPLHVVSLPHRSMS 528
           S K RA   +T +  ++S   HQ +H +S PH S S
Sbjct: 340 SDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,496
Number of Sequences: 5004
Number of extensions: 47985
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 635506058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)