Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_H01
         (1182 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   235   4e-62
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   116   5e-43
AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl t...    29   4.8  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    29   8.5  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  235 bits (575), Expect = 4e-62
 Identities = 111/159 (69%), Positives = 131/159 (82%)
 Frame = +2

Query: 101 PDHPAXSCKARGSNLRVHFKHTYEPAMAIRKXPLRRAVRYLKNVIEKKECIPFRRFNGGV 280
           P++   SCKARGS+LRVHFK+T+E AMA+R  PLRRA  +L +V E KE +PFRRF+GG+
Sbjct: 10  PENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGI 69

Query: 281 GRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRR 460
           GR AQ KQ+ TTQGRWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA  LRR
Sbjct: 70  GRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRR 129

Query: 461 RTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDA 577
           RTYRAHGRINPYMSSPCHIEV L+E+ED V++  PTDDA
Sbjct: 130 RTYRAHGRINPYMSSPCHIEVILAEKEDVVSK--PTDDA 166


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  116 bits (278), Expect(2) = 5e-43
 Identities = 56/75 (74%), Positives = 63/75 (84%)
 Frame = +2

Query: 353 LQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 532
           L LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125

Query: 533 EREDAVARVAPTDDA 577
           E+ED V++  PTDDA
Sbjct: 126 EKEDVVSK--PTDDA 138



 Score = 77.8 bits (183), Expect(2) = 5e-43
 Identities = 35/56 (62%), Positives = 44/56 (78%)
 Frame = +2

Query: 101 PDHPAXSCKARGSNLRVHFKHTYEPAMAIRKXPLRRAVRYLKNVIEKKECIPFRRF 268
           P++   SCKARGS+LRVHFK+T+E AMA+R  PLRRA  +L +V E KE +PFRRF
Sbjct: 10  PENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65


>AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl trna
           synthetase protein2 protein.
          Length = 551

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 620 FDAQAFSWKAFSSLEHHQ*GLPWRQHLRVR*DILRCGRETTCRG 489
           F + A+  +A ++L  H+  L    HL  + D+LRC R T+C G
Sbjct: 344 FGSYAYMQRAPNALHLHKEILRRMHHLH-QYDVLRCDRSTSCHG 386


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = +2

Query: 326 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 487
           W K+    +  LL  AE++    + D+D++V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 488 NPYMSSPCHIEVCLSER 538
           NP+  SPC ++   S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,156,207
Number of Sequences: 27780
Number of extensions: 290892
Number of successful extensions: 737
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3234681980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)