Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_G24
         (1130 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    30   0.68 
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    27   3.6  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   3.6  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   8.4  

>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1115

 Score = 29.9 bits (64), Expect = 0.68
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
 Frame = +1

Query: 565  YLISQERFVKCSKRDAQKQALTRATRYSRYTTPKERTGRHYRTDT-----RRFRIPPPAR 729
            YL+ +E  ++ ++ D+ + ALT    Y  Y   K +       D      RRF+  PP+ 
Sbjct: 1036 YLLDEE--IQLTEHDSIEDALTALKLYDCYDKLKSQGKLEETLDNIYEVGRRFKFRPPSV 1093

Query: 730  GSQSRSDRRRHIQQSAL 780
             S S  DR  +  +S +
Sbjct: 1094 ASMSLEDRNSYGDESVI 1110


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 747 RSQKTHTTVSSHSVKKQQKIDNLVNGSGDLNHNHEDDISTVKHTLPQSNGEXGTD 911
           RS +   T+   +++  +    L N +  LN NH DD++  KH +  SN   G +
Sbjct: 319 RSSENENTIRRLALENHE----LKNSNNQLN-NHIDDLTREKHLIALSNNPKGDE 368


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 495 ALDRVRQSPSNGVSTASPQQPTPVPHQPGKV 587
           A DR+  +PS+  ST SP +  P P  P  V
Sbjct: 409 AKDRLSLTPSSTPSTPSPAESLPQPSNPTSV 439


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 887 LWKRMFNSANVVFVIVVEITGAVHQIVYFLLFLNAMRAD 771
           LW+++    +V F I VE +  +  I  F LF++ M  D
Sbjct: 662 LWEKLLEYVSVCFFINVEESVRISWISQFQLFIDEMFPD 700


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,518,450
Number of Sequences: 5004
Number of extensions: 62391
Number of successful extensions: 197
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 601638964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)