Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_G24
(1130 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0932 - 32841331-32842242 34 0.24
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 33 0.55
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 32 0.96
07_01_0789 - 6150257-6151046,6151167-6151390,6151816-6151991,615... 31 1.3
03_04_0029 - 16610182-16611753 31 1.3
06_03_0526 + 21771519-21771607,21771685-21771810,21771890-217720... 30 2.9
04_01_0441 - 5750765-5750822,5750936-5751026,5751112-5751313,575... 30 2.9
12_02_0436 - 19076486-19076609,19076860-19076944,19077321-190774... 29 6.8
>02_05_0932 - 32841331-32842242
Length = 303
Score = 33.9 bits (74), Expect = 0.24
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = +3
Query: 504 RVRQSPSNGVSTASPQQPTPVPHQPGKVRQMFEERRTKAGIDKSYPLQPIHNTERTNRKT 683
RVR P + PQ P P+P G V + RR KS P + N NR++
Sbjct: 84 RVRPDPQPSLLLPPPQPPPPMPESTGDVAEKKRGRRKNKNGAKSAPFACLLNALLCNRRS 143
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 32.7 bits (71), Expect = 0.55
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 571 ISQERFVKCSKRDAQKQALTRATRYSRYTTPKER-TGRHYRTDTRRFRIPPPARGSQSRS 747
+SQ + V+ + R A T S+ TP R T R R PPP R S SRS
Sbjct: 1 MSQSKEVRYTARSITPPADRNGTSKSKSPTPVRRSTSRSPPPKKSDSRSPPPRRRSTSRS 60
Query: 748 DR-RRH 762
R RRH
Sbjct: 61 PRPRRH 66
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 31.9 bits (69), Expect = 0.96
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 510 RQSPSNGVSTASPQQPTP-VPHQPGKVRQMFEERRTKAGIDKSYPL--QPIHNTERTNRK 680
R SP++ STA PQ P P + P +++ E G+ + +P +P+ + + +
Sbjct: 255 RPSPASAPSTAPPQPPPPKISKSPSFIQEEIEVAEVLFGLTRQFPCPSKPVESNHKLEVR 314
Query: 681 TLP 689
P
Sbjct: 315 DAP 317
>07_01_0789 -
6150257-6151046,6151167-6151390,6151816-6151991,
6152778-6153801
Length = 737
Score = 31.5 bits (68), Expect = 1.3
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 462 IASLYEAQQARALDRVRQSPSNGVSTASPQQPTPVP--HQP-GKVRQMFEERRTKA 620
I+SL+++ LD PS+ S + P P P HQP R++ E +R A
Sbjct: 208 ISSLFDSMPPPTLDTAAAEPSSSASAERREPPPPAPDEHQPSAAAREVAEGKRPAA 263
>03_04_0029 - 16610182-16611753
Length = 523
Score = 31.5 bits (68), Expect = 1.3
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -3
Query: 678 SGSFFRCCVSAVAGXXXXXXXXXXXLRTFDE-PFLADEVQASAAAVRLY*RHCWEIASPG 502
+G+ A AG F+E PF A+ V+++ + +R Y WE+++P
Sbjct: 440 AGAILAAADVAAAGEGREGWRERMAAAGFEEAPFGAEAVESARSLLRKY-DSGWEMSAPS 498
Query: 501 PRHAPVALR 475
P A VALR
Sbjct: 499 PAAAAVALR 507
>06_03_0526 +
21771519-21771607,21771685-21771810,21771890-21772010,
21772123-21772851,21772954-21773349,21774594-21774665,
21774741-21774803,21775236-21775337
Length = 565
Score = 30.3 bits (65), Expect = 2.9
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +3
Query: 462 IASLYEAQQARALDRVRQSPSNGVSTASPQQPTPVPHQPGKVRQMFEERRTKAGIDKSY 638
+AS++ ++R L RQ ++ A P P P P ++ M ERR + I+ S+
Sbjct: 286 LASVHMQTRSRELAAARQRDTHA---APPPPPPPPPPSSSQLHHMISERRRRERINDSF 341
>04_01_0441 -
5750765-5750822,5750936-5751026,5751112-5751313,
5751392-5752033,5752175-5752409,5752500-5752619,
5752864-5753282
Length = 588
Score = 30.3 bits (65), Expect = 2.9
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 531 VSTASPQQPTPVPHQPGKVRQMFEERRTKAGIDKSYPLQPIHNTE 665
+S+A+ +QP + H P ++MF +R A + P+ E
Sbjct: 295 LSSATDRQPVAMSHMPNSFKRMFSQRSAAAAAATTSTTSPLSKVE 339
>12_02_0436 -
19076486-19076609,19076860-19076944,19077321-19077486,
19078213-19078889,19079372-19079475,19079582-19079817
Length = 463
Score = 29.1 bits (62), Expect = 6.8
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -1
Query: 788 NAMRADCCMCLLRS-LLDCDPRAG 720
+A R CC CLLRS L CD R G
Sbjct: 350 DAGRGGCCCCLLRSGLRGCDARDG 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,494,857
Number of Sequences: 37544
Number of extensions: 421257
Number of successful extensions: 1474
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1470
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3421418428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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