Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_G24
         (1130 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    27   0.23 
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    26   0.53 
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    25   1.2  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    25   1.6  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    25   1.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   6.6  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 0.23
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = +1

Query: 547 RSSRRLYLISQERFVKCSKRDAQKQALTRATRYSRYTTPKERTGRHYRTDT--RRFRIPP 720
           R   R Y     ++ K    + +++ L   T   RY+  +ER  R Y+ +   R++R   
Sbjct: 239 RDRNREYRKKDRQYEKL--HNEKEKLLEERTSRKRYSRSREREQRSYKNENSYRKYRETS 296

Query: 721 PARGSQSRSDRRRHIQQSALIALRNS 798
             R S+ R +R R  +   + +L N+
Sbjct: 297 KER-SRDRIERERSREPKIISSLSNN 321


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 26.2 bits (55), Expect = 0.53
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 547 RSSRRLYLISQERFVKCSKRDAQKQALTRATRYSRYTTPKERTGRHYRTDT--RRFRIPP 720
           R   R Y     R+ K    + +K+ L   T   RY+  +ER  + Y+ +   R++R   
Sbjct: 239 RDRNREYKKKDRRYEKL--HNEKKKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETS 296

Query: 721 PARGSQSRSDRRR 759
             R S+ R +R R
Sbjct: 297 KER-SRDRRERGR 308


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
 Frame = +1

Query: 547 RSSRRLYLISQERFVKCSKRDAQKQALTRATRYSRYTTPKERTGRHYRTDT--RRFRIPP 720
           R   R Y     ++ K    + +++ L   T + RY+  +ER  + Y+ +   R++R   
Sbjct: 239 RDRNREYRKKDRQYEKL--HNEKEKFLEERTSHKRYSRSREREQKSYKNEREYRKYRETS 296

Query: 721 PARGSQSRSDRRRHIQQSALIALRN 795
             R  + R +R R  +   + +L N
Sbjct: 297 KER-FRDRRERERSKESKIISSLSN 320


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +1

Query: 547 RSSRRLYLISQERFVKCSKRDAQKQALTRATRYSRYTTPKERTGRHYRTDT--RRFRIPP 720
           R   R Y     ++ K    + +++ L   T   RY+  +ER    Y+ +   R++R   
Sbjct: 228 RDRNREYRKKDRQYEKL--HNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETS 285

Query: 721 PARGSQSRSDRRRHIQQSALIALRN 795
             R S+ R++R R  +++ +I+  N
Sbjct: 286 KGR-SRDRTERERS-KETKIISSNN 308


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +1

Query: 547 RSSRRLYLISQERFVKCSKRDAQKQALTRATRYSRYTTPKERTGRHYRTDT--RRFRIPP 720
           R   R Y     ++ K    + +++ L   T   RY+  +ER    Y+ +   R++R   
Sbjct: 239 RDRNREYRKKDRQYEKL--HNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETS 296

Query: 721 PARGSQSRSDRRRHIQQSALIALRN 795
             R S+ R++R R  +++ +I+  N
Sbjct: 297 KGR-SRDRTERERS-KETKIISSNN 319


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 723 WWWNSKPSRI 694
           WWWN K S +
Sbjct: 366 WWWNMKISNL 375


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,873
Number of Sequences: 438
Number of extensions: 5045
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38198817
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)