Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_G22
(1160 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 198 9e-52
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 66 1e-11
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 66 1e-11
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 34 0.043
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 29 0.93
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 29 1.6
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 29 1.6
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom... 28 2.8
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 28 2.8
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 27 3.8
SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ... 27 3.8
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe... 27 5.0
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 27 6.6
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 27 6.6
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 198 bits (484), Expect = 9e-52
Identities = 98/260 (37%), Positives = 160/260 (61%)
Frame = +3
Query: 204 KHLANXPTWKILIYXSVGQAIISPLVSVKALRELGVTLHLQLHSDRXSIPEVPAVYFCSP 383
+H +N P WK+LI+ G IS ++ + LR+ GVT+H+ + S R I +VPA+YF P
Sbjct: 38 QHASNFPIWKVLIFDKAGSETISSVLRISDLRKHGVTVHMNITSFRQPIADVPAIYFVQP 97
Query: 384 SDENLDRICQDLDSGIYDQYHLNFISPITRHKLEDLAASAIQSNSAVNIHKVFDQYLNFI 563
+ EN++ I +DL G+Y+ ++ F S I+R LE A A ++N++ IH+V+DQYLN++
Sbjct: 98 TQENIELIIEDLSKGLYESAYVCFSSTISRALLEQFAELASKTNTSHMIHQVYDQYLNYV 157
Query: 564 CLEDDLFIMKHQQSDSLSYYAINKADTKDTEMEVIMDNIVESLFSVFVTMGNVPFIRSTK 743
LE D F ++ + ++ + + + + + +IV LFSV VT+G +P IR +
Sbjct: 158 VLESDFFSLQLPK----IFHTFHNPSSDEALINSRVQDIVNGLFSVIVTLGTIPIIRCPQ 213
Query: 744 GNAAEMVAKKLDKKLRENLWDARNNLFHGNTGQGGAFSFTRPMLILLDRNXDMATPLHHT 923
G+AAEMVA+KL+++L+++L + ++ N RP+LILLDR D+ ++H+
Sbjct: 214 GSAAEMVAQKLNQRLKDHLMNTKDAFVSVNPK-------PRPILILLDRTVDLIPMINHS 266
Query: 924 WTYQALAHDVXDLSLNXAVV 983
WTYQAL HD ++ LN V
Sbjct: 267 WTYQALIHDTLNMQLNRITV 286
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 65.7 bits (153), Expect = 1e-11
Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 1/243 (0%)
Frame = +3
Query: 228 WKILIYXSVGQAIISPLVSVKALRELGVTLHLQLHSDRXSIPEVPAVYFCSPSDENLDRI 407
WK+LI + II+ +++ +L E + L + R A+Y ++ +D I
Sbjct: 24 WKVLIVDTKTADIINHFITIHSLLEEKIAAVEILENPRTPNSSFEALYILHSEEKLVDCI 83
Query: 408 CQDLD-SGIYDQYHLNFISPITRHKLEDLAASAIQSNSAVNIHKVFDQYLNFICLEDDLF 584
+D + Y H+ F+ + + L S I S I V YL+F LE F
Sbjct: 84 LKDEEYDKRYPGIHIVFLDMVKEPLINKLRTSRIASK----IRTVQVAYLDFTSLESRYF 139
Query: 585 IMKHQQSDSLSYYAINKADTKDTEMEVIMDNIVESLFSVFVTMGNVPFIRSTKGNAAEMV 764
+ S Y+ N A + + + +FSV V++G P IR A
Sbjct: 140 QVHDSFSGLRLYHPSNAAIIRQE-----LSKVAHGIFSVCVSLGISPNIRCYYPKNAPHA 194
Query: 765 AKKLDKKLRENLWDARNNLFHGNTGQGGAFSFTRPMLILLDRNXDMATPLHHTWTYQALA 944
+K + L L + + G A S + +++DR+ D A P H +TYQA+
Sbjct: 195 SKTMSFILANQLSEIVEEYCSKHPGYHEAAS--KSTCLIVDRSLDTAAPFLHEFTYQAMI 252
Query: 945 HDV 953
HD+
Sbjct: 253 HDL 255
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 65.7 bits (153), Expect = 1e-11
Identities = 58/241 (24%), Positives = 110/241 (45%)
Frame = +3
Query: 231 KILIYXSVGQAIISPLVSVKALRELGVTLHLQLHSDRXSIPEVPAVYFCSPSDENLDRIC 410
KIL+ I+S ++ L E + L + L + R + + V F P+ L +C
Sbjct: 22 KILLLEEDTTKIVSSCITQSNLLEQQIYLTVLLGNKREKLRHLKCVAFLRPTPTTLRLLC 81
Query: 411 QDLDSGIYDQYHLNFISPITRHKLEDLAASAIQSNSAVNIHKVFDQYLNFICLEDDLFIM 590
++L Y +YHL F + I + LE LA +S+ + + + +L+++ + +DL
Sbjct: 82 EELRDPKYAEYHLYFTNVIPKSFLERLA----ESDDFEAVKSIQEFFLDYLVVNNDL--- 134
Query: 591 KHQQSDSLSYYAINKADTKDTEMEVIMDNIVESLFSVFVTMGNVPFIRSTKGNAAEMVAK 770
S ++ + D+ D + + + S+ +++ P IR + ++
Sbjct: 135 ---ASFNIPHII---EDSPDNWQDGAFHRTHQGIISLLLSLKKKPVIRYDNNS---LLCL 185
Query: 771 KLDKKLRENLWDARNNLFHGNTGQGGAFSFTRPMLILLDRNXDMATPLHHTWTYQALAHD 950
KL +++ + + LF+ T P+L+LLDR D TPL WTYQA+ H+
Sbjct: 186 KLAEEVSYTI-QHESQLFNFRKPD------TAPILLLLDRKNDPITPLLTQWTYQAMVHE 238
Query: 951 V 953
+
Sbjct: 239 L 239
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 33.9 bits (74), Expect = 0.043
Identities = 30/119 (25%), Positives = 46/119 (38%)
Frame = +3
Query: 384 SDENLDRICQDLDSGIYDQYHLNFISPITRHKLEDLAASAIQSNSAVNIHKVFDQYLNFI 563
S +N + DL S IY+ H N +SP H QS + K
Sbjct: 650 SYQNDRPLATDLPSVIYNHKHPNVVSPFYVHPYIKQGILKFQSKESHKFRKKEVWSTVLA 709
Query: 564 CLEDDLFIMKHQQSDSLSYYAINKADTKDTEMEVIMDNIVESLFSVFVTMGNVPFIRST 740
L+ D+F + + + +LSY D VI I+ SL F + + ++ST
Sbjct: 710 VLQRDVFTLYNLNTPNLSYDP-KDLDISKVGKPVIKTTIIASLAKPFPSSEDAVVLKST 767
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 29.5 bits (63), Expect = 0.93
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Frame = +3
Query: 432 YDQYHLNFISPI-TRHKLEDLAASAIQSNSAVNIHKVFDQYLNFICLED-DLFIMKHQQS 605
Y++ LN I + T K+E++ V++ +F +LNFI ++ ++F M +
Sbjct: 24 YERKRLNEIGDLLTPQKIEEVLNCKDTKQRNVSLEDIFQDFLNFIITKNQEMFSM--DCN 81
Query: 606 DSLSYYAINKADTKDTEM---EVIMDNIVESLFSVFVTMGN--VPFIRSTKGNAAEMVAK 770
Y + A+ K ++ + N + L V P I+ E++ K
Sbjct: 82 SICKSYVLKVAEEKIEKLLKENGTLKNEEKCLRMQIVAQEEYVAPLIQK-----LEIIEK 136
Query: 771 KLDKKLRENLWD 806
KLDK R+N+ D
Sbjct: 137 KLDKSFRKNMED 148
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 28.7 bits (61), Expect = 1.6
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +3
Query: 222 PTWKILIYXSVGQAIISPLVSVKALRELGVTLHLQLHSDRXSIPEVPAVYFCSPSDENLD 401
P + Y +G+ + S + + LR LG T+H L + +Y C S E L
Sbjct: 160 PLSSVHAYVEIGEGMFSMEIVTEQLRLLGATVHASLQMTEENPVSHAVLYDC--SQETLK 217
Query: 402 RI 407
+I
Sbjct: 218 KI 219
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 28.7 bits (61), Expect = 1.6
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +3
Query: 366 VYFCSPSDENLDRICQDLDSGIYDQYHLNFISPITR 473
+ C+PS+ +D I + +G+YD + F + R
Sbjct: 1334 ILICAPSNAAIDEILLRIKAGVYDHEGIKFFPKVIR 1369
>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 27.9 bits (59), Expect = 2.8
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 669 MDNIVESLFSVFVTMGNVPFIR-STKGNAAE--MVAKKL 776
+ NI+E+LFS V +PF STK N +AKKL
Sbjct: 359 LSNIIENLFSAVVETAIIPFFESSTKRNVDSKLTLAKKL 397
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +3
Query: 912 LHHTWTYQALAHDVXDLSLNXAVVPXNTMLQYRFRNQTRGXVTLIE 1049
+ H WTY D+ S + V+ L F+N T G E
Sbjct: 772 IDHLWTYFPFKKDLKTKSFDCIVIASQPKLSLAFQNLTSGKFNFAE 817
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +3
Query: 633 KADTKDTEMEVIMDNIVESLFSVFVTMGNVPFIRSTKGNAAEMVAKKLDKKLRENLWDAR 812
K D D E ++ N+ E ++ F+ + + ++ K LD++ EN+ + +
Sbjct: 131 KVDGSDEESRMMQKNLTELIYQKFLLVVQPRHLIPVGDQEMQLRIKHLDRRKSENVSEIK 190
Query: 813 NN 818
N
Sbjct: 191 KN 192
>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 882 LDRNXDMATPLHHTWTYQALAHDVXDLSLNXAVV 983
++RN D +H+ W Y+ L V L++ A+V
Sbjct: 110 INRNQDFQDDMHYVWLYEPLPKRVMALAVLFALV 143
>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 460
Score = 27.1 bits (57), Expect = 5.0
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +3
Query: 489 LAASAIQSNSAVN-IHKVFDQYLNFICLEDDLFIMKHQQSDSLS---YYAINKADTKDTE 656
L ++I+ SA++ H+ + LN ++++ HQ D ++ Y+ +N D D+E
Sbjct: 303 LQLTSIKDVSALDKAHQDNSEDLNNPFIKNNDKTKFHQNIDWIALEKYFEVNALDISDSE 362
Query: 657 MEVIMDNIVESLFSV 701
E + D + +S FS+
Sbjct: 363 SEDLSDILSDSEFSI 377
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 26.6 bits (56), Expect = 6.6
Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Frame = -2
Query: 817 LFRASQRFS-LNFLSSFLATISAAL----PLVLRIKGTLPI-VTNTENRLSTMLSMITSI 656
LF+ RF+ LNFL +F+ + L+ + ++ + V ++ENRLST+++ +
Sbjct: 1370 LFKEEARFACLNFLRNFIPILDEQKFREKHLIKLVLASIIVNVPSSENRLSTLMANFYAF 1429
Query: 655 SVSLV 641
S++++
Sbjct: 1430 SLTVM 1434
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 26.6 bits (56), Expect = 6.6
Identities = 20/87 (22%), Positives = 38/87 (43%)
Frame = +3
Query: 420 DSGIYDQYHLNFISPITRHKLEDLAASAIQSNSAVNIHKVFDQYLNFICLEDDLFIMKHQ 599
DSG+ + + L+F+S + + A I S +++ D Y D+ F +K+
Sbjct: 63 DSGVSESWVLDFLSVTGEKTISEFLAQKIWKTSNGDLNVAVDMYF------DESFNIKNS 116
Query: 600 QSDSLSYYAINKADTKDTEMEVIMDNI 680
DS S D T+M+ + + +
Sbjct: 117 NPDSESQ---KDTDASLTQMDQLSNTV 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,830,274
Number of Sequences: 5004
Number of extensions: 74291
Number of successful extensions: 200
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 621560784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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