Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_G22
         (1160 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0348 - 23346182-23348022,23348118-23348148                      188   7e-48
02_03_0030 - 14083117-14083166,14083620-14083689,14083777-140838...    70   4e-12
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999...    53   5e-07
02_03_0084 - 15041261-15041437,15041625-15041765,15042857-150429...    40   0.004
08_01_0187 + 1572014-1572180,1572266-1572422,1573047-1573097,157...    31   2.3  
09_01_0149 + 2240183-2241133                                           29   7.0  
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172...    29   9.3  

>03_05_0348 - 23346182-23348022,23348118-23348148
          Length = 623

 Score =  188 bits (458), Expect = 7e-48
 Identities = 99/253 (39%), Positives = 146/253 (57%)
 Frame = +3

Query: 228 WKILIYXSVGQAIISPLVSVKALRELGVTLHLQLHSDRXSIPEVPAVYFCSPSDENLDRI 407
           +KIL+  S   A+++P++ V  LR  GVTLHL +   R  +P+ PAVY   P+  N+DR+
Sbjct: 43  YKILVMDSPCVALLAPVLRVGELRRHGVTLHLNIDKARQQVPDAPAVYLLRPTAANVDRV 102

Query: 408 CQDLDSGIYDQYHLNFISPITRHKLEDLAASAIQSNSAVNIHKVFDQYLNFICLEDDLFI 587
             D  +G+Y  +HLNF + + R  LE LA++   S SA  + +V DQYL+F+CLE+ LF 
Sbjct: 103 AADAAAGLYASFHLNFSTCVPRALLERLASATAASRSAHRVARVADQYLDFVCLEEGLFS 162

Query: 588 MKHQQSDSLSYYAINKADTKDTEMEVIMDNIVESLFSVFVTMGNVPFIRSTKGNAAEMVA 767
           +   +    +Y A+N     + ++  ++D I   LF V  T+G VP IR   G  AEMVA
Sbjct: 163 LAQPR----AYVALNDPAAAEADITALVDAIALGLFCVVATLGAVPVIRCAGGGPAEMVA 218

Query: 768 KKLDKKLRENLWDARNNLFHGNTGQGGAFSFTRPMLILLDRNXDMATPLHHTWTYQALAH 947
             LD +LR++L  A+ NLF          SF RP+L L DRN +++  + H W+Y+ L H
Sbjct: 219 AALDARLRDHL-IAKPNLF-TEAASTAVASFQRPLLCLFDRNFELSVGIQHDWSYRPLVH 276

Query: 948 DVXDLSLNXAVVP 986
           DV  L  N   +P
Sbjct: 277 DVLGLKSNKLKLP 289


>02_03_0030 -
           14083117-14083166,14083620-14083689,14083777-14083857,
           14083940-14084065,14084916-14085143,14085246-14085325,
           14086567-14086768,14086857-14086946
          Length = 308

 Score = 69.7 bits (163), Expect = 4e-12
 Identities = 53/213 (24%), Positives = 103/213 (48%)
 Frame = +3

Query: 333 SDRXSIPEVPAVYFCSPSDENLDRICQDLDSGIYDQYHLNFISPITRHKLEDLAASAIQS 512
           S R S+  + AVYF  PS +N+ ++ + L +  + +YHL F + +   +++ LA S  Q 
Sbjct: 59  SSRESMAHLKAVYFLRPSSDNVQKLRRHLAAPRFAEYHLFFSNVLKIPQIQVLADSDEQE 118

Query: 513 NSAVNIHKVFDQYLNFICLEDDLFIMKHQQSDSLSYYAINKADTKDTEMEVIMDNIVESL 692
                + +V + Y +F  ++   F +  + +    Y      D     M+   D  V+ +
Sbjct: 119 V----VQQVQEFYADFCAIDPYHFTLNIRNNHV--YMLPMVVDPPG--MQSFCDRAVDGI 170

Query: 693 FSVFVTMGNVPFIRSTKGNAAEMVAKKLDKKLRENLWDARNNLFHGNTGQGGAFSFTRPM 872
            SVF+ +   P IR  + +    VAK++ ++    +++  + LF     +  +      +
Sbjct: 171 ASVFLALKRRPVIRYQRTSD---VAKRIAQETARLMYEQESGLFDFRRTENSS------L 221

Query: 873 LILLDRNXDMATPLHHTWTYQALAHDVXDLSLN 971
           L+++DR  D  TPL + WTYQA+ H++  +  N
Sbjct: 222 LLVIDRRDDPVTPLLNQWTYQAMVHELIGIENN 254


>04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,
            9992466-9992555,9992692-9992782,9993530-9993729,
            9998024-9998101,9998196-9998312,10000017-10000112,
            10000192-10000317,10000533-10000629,10000979-10001023,
            10002106-10002179,10002267-10002350,10002439-10002522,
            10002660-10002851,10003775-10003903,10004061-10004093,
            10004190-10004286,10004833-10004883,10005211-10005289,
            10005480-10005552,10005595-10005691,10006392-10006473,
            10008345-10008691,10010271-10010535,10010624-10010743,
            10010971-10011358
          Length = 1219

 Score = 52.8 bits (121), Expect = 5e-07
 Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 5/223 (2%)
 Frame = +3

Query: 327  LHSDRXSIPEVPAVYFCSPSDENLDRICQDLDSGI--YDQYHLNFISPITRHKLEDLAAS 500
            L+  R  +P + A+YF  P+ EN+     D+   I  Y + ++ F SP+ R   E +A  
Sbjct: 462  LYMRRQPLPLMDAIYFIQPTKENIRIFMSDMSGKIPLYKKAYVFFSSPVQR---ELVAQI 518

Query: 501  AIQSNSAVNIHKVFDQYLNFICLEDDLFIMKHQQSDSLSYYAINKADTKDTEMEVIMDNI 680
               SN    I  + +  L +  ++   F   H ++    +    +   K      +M   
Sbjct: 519  KKDSNVRARIGALSEMNLEYFAIDSQGFTTDHDKALEELFSENAEGSLKYNSCLNMMATR 578

Query: 681  VESLFSVFVTMGNVPF--IRSTKGNAAEMVAKKLDKKLRENLWDARNNLFHGNTGQGGAF 854
            + ++F+       V +   R+   +    +      KL   +W    N           F
Sbjct: 579  IATVFASMREFPRVHYRVARTIDASTLTTLRDLAPTKLAAGVW----NCLARFKAMIPEF 634

Query: 855  SFTRPM-LILLDRNXDMATPLHHTWTYQALAHDVXDLSLNXAV 980
              T    L+++DR+ D   P+ H WTY A+ HD+  +  N  V
Sbjct: 635  PQTETCELLIVDRSIDQIAPIIHEWTYDAMCHDLLCMDGNKYV 677


>02_03_0084 - 15041261-15041437,15041625-15041765,15042857-15042946,
            15043111-15043201,15043953-15044155,15045361-15045438,
            15045535-15045651,15046111-15046161,15046405-15046500,
            15046726-15046742,15046938-15047064,15050585-15050681,
            15051565-15051638,15051910-15051993,15052099-15052290,
            15054191-15054319,15055607-15055639,15055747-15055843,
            15055940-15055990,15057494-15057564,15058305-15058455,
            15058625-15058703,15059265-15059346,15060335-15060335,
            15060565-15060620,15060969-15061018,15061511-15061580
          Length = 834

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 5/202 (2%)
 Frame = +3

Query: 429  IYDQYHLNFISPITRHKLEDLAASAIQSNSAVNIHKVFDQYLNFICLEDDLFIMKHQQSD 608
            +Y + ++ F SPI +  +  +      S+    I  + +  L +  ++   F   H+++ 
Sbjct: 201  LYKKAYVFFSSPIQKELVTQIKKD---SSVLPRIGALSEMNLEYFAIDSQGFTTDHERAL 257

Query: 609  SLSYYAINKADTKDTEMEVIMDNIVESLFSVFVTMGNVPFI--RSTKGNAAEMVAKKLD- 779
                ++ N  D+   +    ++ +   + +VF +M   P +  R  K   A +     D 
Sbjct: 258  E-ELFSENALDSH--KYNACLNTMATRISTVFASMREFPRVHYRVAKTIDASVTTTLRDL 314

Query: 780  --KKLRENLWDARNNLFHGNTGQGGAFSFTRPMLILLDRNXDMATPLHHTWTYQALAHDV 953
               KL   +W+  + L    T            L+++DR+ D   P+ H WTY A+ HD+
Sbjct: 315  VPTKLAAAVWNCLSKL---KTSIPDYPQTETCELLIVDRSVDQIAPIIHEWTYDAMCHDL 371

Query: 954  XDLSLNXAVVPXNTMLQYRFRN 1019
              +  N  V   +  L  +  N
Sbjct: 372  LCMDGNKYVHEASERLHDKMSN 393



 Score = 32.3 bits (70), Expect = 0.75
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +3

Query: 231 KILIYXSVGQAIISPLVSVKALRELGVTLHLQLHSDRXSIPEVPAVYFCSPSDE 392
           ++LI   +   IIS    +  + E GV+L   L+  R  +P + A+YF  P+ E
Sbjct: 59  RVLIMDKLTVKIISCSCKMADITEEGVSLVEDLYKRRQPLPSLDAIYFIQPTKE 112


>08_01_0187 +
           1572014-1572180,1572266-1572422,1573047-1573097,
           1573371-1573463,1573595-1573681
          Length = 184

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 693 FSVFVTMGNVPFIRSTKGNAAEMVAKKLDKKLRENLWDARNNLFHGNTGQGGAFSFT 863
           FS    +GN P + +    A     K L    +EN WDA+  +  G+ G   + S T
Sbjct: 26  FSYLAALGNCPLVAAVLAGAIAQFIKVLTTWYKENRWDAKQLV--GSGGMPSSHSAT 80


>09_01_0149 + 2240183-2241133
          Length = 316

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +1

Query: 313 LFIYNYIQIEXRYQKYLLFISVLLLMKIWIAFAKISIVG 429
           + IY+ +Q++  Y   +L + VLL +  ++AF   ++VG
Sbjct: 162 VLIYSVMQVQRHYLIKVLSVQVLLFVLCFLAFLYFNVVG 200


>03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,
            1720531-1720610,1720854-1720981,1721004-1721012,
            1723701-1723742,1725891-1726002,1726358-1726514,
            1726678-1726762,1727628-1727713,1727998-1728042
          Length = 1106

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 675  NIVESLFSVFVTMG--NVPFIRSTKGNAAEMVAKKLDKKLRENLWDARNNL 821
            N V+ L    ++M   N PF        AEM A+ LD+ + E LWD   N+
Sbjct: 1054 NSVDELIGRDMSMSPWNGPFREDVGAAGAEMEAEILDELVDETLWDVLLNV 1104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,078,943
Number of Sequences: 37544
Number of extensions: 446085
Number of successful extensions: 1059
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3538190388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)