Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_G22
         (1160 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    27   0.42 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    26   0.55 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   6.8  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   9.0  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 26.6 bits (56), Expect = 0.42
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 690 LFSVFVTMGNVPFIRSTKGNAAEMVAKKLDKKLRENLWDARNN 818
           + + F+     PFI +   + A +   +  ++  ENL D RNN
Sbjct: 441 IVTYFIVRALKPFIPAVTKSLASLTDAENSRRAMENLGDGRNN 483


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 26.2 bits (55), Expect = 0.55
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 355 KYLLFISVLLLMKIWIAFAKISI 423
           KYLLF  +L+ + IWI    +++
Sbjct: 314 KYLLFTMILVTLSIWITVCVLNV 336


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 18/78 (23%), Positives = 30/78 (38%)
 Frame = +3

Query: 567 LEDDLFIMKHQQSDSLSYYAINKADTKDTEMEVIMDNIVESLFSVFVTMGNVPFIRSTKG 746
           L  + FI+  + + ++ +      D     M V+ DN  + LFS +       FI     
Sbjct: 330 LNPNTFILVAENNTTMVFCNDLSIDRSTNTMYVLSDNFQQLLFSKYDAKKRNFFITMFDL 389

Query: 747 NAAEMVAKKLDKKLRENL 800
           +      KK D K +  L
Sbjct: 390 DFLTNACKKKDDKPKRRL 407


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 821 EIVSGIPKIFSQFFIKLFSNHLSSITFSTSYK 726
           E+V G+P I+  +   +  N++ SI    +YK
Sbjct: 37  EVVVGVPSIYLTYAKNILPNNI-SIAGQNTYK 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,144
Number of Sequences: 438
Number of extensions: 4735
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39403827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)