Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_G21
(1277 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.028
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.25
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.45
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.60
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 3.2
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 26 9.7
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 9.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 9.7
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.7 bits (76), Expect = 0.028
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = -1
Query: 980 PPPPPPXXXXPXPXXX--XXPPPXXXXXXPPPP 888
PPPPPP P P PPP PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764
Score = 32.3 bits (70), Expect = 0.15
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -3
Query: 981 PXP-PPPXXXXXXPPXXXPPPXXXXXXXPPPP 889
P P PPP PP PPP PPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 29.9 bits (64), Expect = 0.79
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -3
Query: 981 PXPPPPXXXXXXPPXXXPPPXXXXXXXPPPP 889
P PPP PP PP PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/49 (28%), Positives = 14/49 (28%)
Frame = -3
Query: 1068 PPPXXXXXXXXXXXXXPXXXXXXXXXXXXPXPPPPXXXXXXPPXXXPPP 922
PPP P P PPPP PP PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -1
Query: 980 PPPPPPXXXXPXPXXXXXPPP 918
PPPPPP P PPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Frame = -2
Query: 982 PXPPPPXXXXX---PXPXXXTXPXXXXXXXPPPPP 887
P PPPP P P P PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Frame = -2
Query: 982 PXPPP----PXXXXXPXPXXXTXPXXXXXXXPPPPP 887
P PPP P P P P PPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Frame = -3
Query: 627 PPPPGXXQKXPPPXG-GXXTXXXPXPPLXXHVPSXG-----XXGXKKXPPXPP 487
PPPP + PP G G P PP + G G PP PP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -1
Query: 977 PPPPPXXXXPXPXXXXXPPPXXXXXXPPPP 888
PPPPP PP PPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 26.6 bits (56), Expect(2) = 0.25
Identities = 11/32 (34%), Positives = 11/32 (34%)
Frame = -2
Query: 982 PXPPPPXXXXXPXPXXXTXPXXXXXXXPPPPP 887
P PPPP P PPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 26.2 bits (55), Expect = 9.7
Identities = 18/64 (28%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
Frame = -3
Query: 675 APPXXXPXXKXFXFXXP-PPPGXXQKXPPPXGGXXTXXXPXPPLXXHVPSXGXXGXKKXP 499
APP P P PP T P PP V + KK P
Sbjct: 252 APPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRP 311
Query: 498 PXPP 487
P PP
Sbjct: 312 PPPP 315
Score = 23.4 bits (48), Expect(2) = 0.25
Identities = 18/66 (27%), Positives = 19/66 (28%), Gaps = 7/66 (10%)
Frame = -2
Query: 769 PPPPXXXXXFXXXTRGAXXXXKXXXNPPXPXSPP-------PXXPPXXKXXFXGTPPXXG 611
PPPP + NPP P PP P PP TPP
Sbjct: 362 PPPPPRSAPSTGRQPPPLSSSRAVSNPPAP--PPAIPGRSAPALPPLGNASRTSTPPVPT 419
Query: 610 XTKXPP 593
PP
Sbjct: 420 PPSLPP 425
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.45
Identities = 32/140 (22%), Positives = 34/140 (24%), Gaps = 1/140 (0%)
Frame = -1
Query: 980 PPPPPPXXXXPXPXXXXXPPPXXXXXXPPPPXXXXXXXXXXXXXXXXXTXXPXXXXXGGX 801
P P P P P PP PP P + P G
Sbjct: 1023 PVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSG- 1081
Query: 800 XXXXXXLPXGXPPPXXPXXFFXXXTGGAPXXXXXGKPPPPXXPPPXXPPXXKXXFXGXP- 624
P G PP P + AP PP P PP K P
Sbjct: 1082 -APPVPAPSGIPPVPKP-------SVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV 1133
Query: 623 PXXGXNKKXPPPKXAXLPXP 564
P P P A P P
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVP 1153
Score = 28.3 bits (60), Expect = 2.4
Identities = 22/74 (29%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Frame = -1
Query: 779 PXGXPPPXXPXXF---FXXXTGGAPXXXXXGKPPPPXXPPPXXPPXXKXXFXGXPPXXGX 609
P G PP P + G P PP PP PP K G PP
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPS-VGVPPVPPP 1213
Query: 608 NKKXP-PPKXAXLP 570
+ P P A LP
Sbjct: 1214 STAPPVPTPSAGLP 1227
Score = 27.9 bits (59), Expect = 3.2
Identities = 30/135 (22%), Positives = 33/135 (24%), Gaps = 3/135 (2%)
Frame = -1
Query: 980 PPPPPPXXXXPXPXXXXXPP-PXXXXXXPPPPXXXXXXXXXXXXXXXXXTXXPXXXXXGG 804
P P P P P PP P PP P P
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP------S 1127
Query: 803 XXXXXXXLPXGXPPPXXPXXFFXXXTG--GAPXXXXXGKPPPPXXPPPXXPPXXKXXFXG 630
+P G PP P GAP PP P P G
Sbjct: 1128 VAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAG 1187
Query: 629 XPPXXGXNKKXPPPK 585
PP ++ P PK
Sbjct: 1188 VPPVPPPSEAPPVPK 1202
Score = 27.1 bits (57), Expect = 5.6
Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Frame = -1
Query: 779 PXGXPPPXXPXXFFXXXT--GGAPXXXXXGKPPPPXXPPPXXPPXXKXXFXGXPPXXGXN 606
P G PP P GAP PP P PP K PP +
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPS-VAAPPVPAPS 1175
Query: 605 KKXPP-PKXA 579
PP PK A
Sbjct: 1176 SGIPPVPKPA 1185
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -1
Query: 980 PPPPPPXXXXPXPXXXXXPPPXXXXXXPPP 891
PP PPP P P PP PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.60
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -3
Query: 981 PXPPPPXXXXXXPPXXXPPPXXXXXXXPPP 892
P PPPP PP P P PPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -1
Query: 980 PPPPPPXXXXPXPXXXXXPPP 918
PPPPPP P PPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -1
Query: 980 PPPPPPXXXXPXPXXXXXPPP 918
PPPPPP P PPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -1
Query: 698 GKPPPPXXPPPXXPPXXKXXFXGXPPXXGXNKK 600
G PPPP PP PP PP G KK
Sbjct: 7 GNPPPPPPPPGFEPPSQPP----PPPPPGYVKK 35
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -1
Query: 980 PPPPPPXXXXPXPXXXXXPPPXXXXXXPPP 891
PPPPPP P PP PP
Sbjct: 206 PPPPPPQQNYPPAASSSAPPMQYQQTAYPP 235
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 9.7
Identities = 20/70 (28%), Positives = 20/70 (28%)
Frame = +1
Query: 571 GXXAXXGGGXFLXXPXXGGXPKXKXFXXGGXXGGGXXGGGGXPXXXXXGAPPVXXXKXXX 750
G GGG P GG F G GG G GG P G
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF 247
Query: 751 GXXGGGXPXG 780
G GG G
Sbjct: 248 GGGLGGFGGG 257
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 9.7
Identities = 18/79 (22%), Positives = 19/79 (24%)
Frame = -1
Query: 725 GGAPXXXXXGKPPPPXXPPPXXPPXXKXXFXGXPPXXGXNKKXPPPKXAXLPXPXXXXPX 546
GG P GK PP P P PPP A P P
Sbjct: 107 GGMPKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP 166
Query: 545 XXMFXPAXXREXKXXPXPP 489
P + PP
Sbjct: 167 IPSSLPPPAQPAAPVKSPP 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,353
Number of Sequences: 5004
Number of extensions: 28302
Number of successful extensions: 252
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 695512300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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