Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_G20
         (1178 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...   130   4e-31
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    29   1.7  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    28   2.9  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    28   2.9  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    27   6.7  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   6.7  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    26   8.8  

>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score =  130 bits (314), Expect = 4e-31
 Identities = 90/312 (28%), Positives = 156/312 (50%), Gaps = 32/312 (10%)
 Frame = +3

Query: 78  SAXRAPENEAT-IQXVQCXGLAVMKIVKHCHEXSCSNMEVAQGALLGLVVENRLEITNCF 254
           ++   PE E+  I+ V+   L VM I+KHC + S  NM    G L+G+ ++  L++++ F
Sbjct: 5   TSLNVPELESPPIERVELESLLVMNIIKHCRD-SFPNMGTI-GQLVGIDIDGVLQVSSSF 62

Query: 255 PFPK----HDDTMDE-------EEYQLDMMRRLRRVNVDHFHVGWYQSADVGNFLSLSL- 398
             P      +  +++       + +   M+ RL+ +     HVGWY  A V +FLS    
Sbjct: 63  ESPSVLENEESAVNKSVSGKARQAHTEAMLNRLQYIGAVTGHVGWYLGAYVSSFLSSPFF 122

Query: 399 LESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIG 578
           +E+QY YQ +   S+  +YD  +S+ G L ++AY+LTP+ +A ++E  +T  +L +  + 
Sbjct: 123 VETQYAYQKANPNSIAFLYDLSQSSNGTLYMRAYQLTPEFMAAHEEKTWTASSLNSHNLT 182

Query: 579 YENLFIEVPIVIRNSPLTNIMISELTE-------------------MIPEEEGSKFLDLG 701
             N+  E+PIVI NS L   ++  L+E                    +P  E     ++ 
Sbjct: 183 PSNVIRELPIVIHNSHLATCLLHSLSEPPTPASTLTAEAALEDCESNLPLTETFSNFEVS 242

Query: 702 TASVLEGQLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDXX 881
             +     +  L+E  DE + E      +Q+ + R+Q    +W+ KR  ENA RAA++  
Sbjct: 243 LGTRYRKNIELLLESTDEFHYEQGNLGFHQRQLAREQAKIQQWIAKRKAENANRAAENLQ 302

Query: 882 PLPEEDVNKLFK 917
           PLP +D  ++FK
Sbjct: 303 PLPLDDWKRIFK 314


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = +3

Query: 219 VVENRLEITNCFPFPKHD----DTMDEEEYQLDMMRRLRRVNVDHFHVGWYQSADVGNFL 386
           + +NRLE  N F FP  D      +   EY   M R+L  +NV    VG  +S  + ++ 
Sbjct: 7   IAKNRLEAMNSFNFPAQDRHERAPLLGSEYDHSMARQLSLLNV----VGMTKSVLMSSYF 62

Query: 387 SLSLL 401
           +L L+
Sbjct: 63  NLMLV 67


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = -1

Query: 779 ELDRFLIQFINTFHETAKLSFENRCSTQIQK--LGSFLFRYHL-GELRDHYVS*W-RVPD 612
           E++R L+ F+  F  T K   ++ C T  +   L  F + + L   L+D     W RV +
Sbjct: 285 EIERKLLSFVMLFENTDKCLIDSECLTSKKSFTLNDFTYDFRLPWYLKDDSWKRWCRVKE 344

Query: 611 NNWH 600
            +W+
Sbjct: 345 YSWN 348


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 308  HVQLVFLLIHGVVMLWKWEAVGNLQTVLND 219
            +++ VFL IH ++  W+WE V  +  ++ D
Sbjct: 969  YLRTVFLRIHFLISEWRWEDVAQILFLIFD 998


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 186 MEVAQGALLGLVVENRLEITNCFPFPKHDDTMDEEEYQLDMMRRLRRVNV 335
           M+  +  L GLV +    +T  +  P H +  +  +++LD  R  RR+N+
Sbjct: 355 MDTTEELLSGLVKD----LTGSYKVPYHPEGPEGPKWELDFSRPWRRINM 400


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 429 IEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGY 581
           + + +VV YD K  +  F  L+A   TP+      E   TPE L+++ + +
Sbjct: 737 VRKDIVVQYDMKPDSPRFQQLRAQITTPEI-----EKQSTPEILKDVDVDF 782


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 516 AIAMYKEGDYTPEALRNLKIGYENLFIEVPIVI 614
           AIA+ ++G +T    RN KI +   ++ V IVI
Sbjct: 553 AIAIIEQGIFTRSGKRNRKIKWRKNYLRVLIVI 585


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,932,715
Number of Sequences: 5004
Number of extensions: 79038
Number of successful extensions: 194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 633513876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)