Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_G20
         (1178 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124...   214   1e-55
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130...    33   0.58 
11_06_0110 + 20212221-20214011,20214072-20214368                       29   7.1  
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157...    29   9.4  

>04_03_0650 -
           18411588-18411645,18412020-18412172,18412340-18412407,
           18412499-18412600,18412695-18412766,18412843-18412891,
           18412971-18413104,18413488-18413554,18414471-18414574,
           18414677-18414793,18415538-18415647,18415763-18415772
          Length = 347

 Score =  214 bits (523), Expect = 1e-55
 Identities = 119/283 (42%), Positives = 167/283 (59%), Gaps = 6/283 (2%)
 Frame = +3

Query: 96  ENEATIQXVQCXGLAVMKIVKHCHEXSCSNMEVAQGALLGLVVENRLEITNCFPFPKHDD 275
           E  + ++ VQ  GLAV+KI+KHC E + +   +  G LLGL V + LE+TNCFPFP  +D
Sbjct: 27  EAPSPLRVVQMEGLAVLKIIKHCEEFAPA---LVTGQLLGLDVGSVLEVTNCFPFPMRED 83

Query: 276 T----MDEEEYQLDMMRRLRRVNVDHFHVGWYQSADVGNFLSLSLLESQYHYQTSIEESV 443
                 D   YQL+MMR LR VNVD+  VGWYQS  +G+F ++ L+E+  +YQ +I   V
Sbjct: 84  DEEADADGANYQLEMMRCLREVNVDNNTVGWYQSCLLGSFQTVELIETFMNYQENIRRCV 143

Query: 444 VVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENLFIEVPIVIRNS 623
            ++YD  +S +G L LKA +LT   + +Y+    T E LR  K+ + ++F E+PI + NS
Sbjct: 144 CIVYDPSRSNQGVLALKALKLTDSFMDLYRNNGLTGEKLREKKLSWVDIFEEIPIKVSNS 203

Query: 624 PLTNIMISELTEMIPEEE-GSKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRYQQLV 800
            L +  ++EL    P  +     L L TA  +E  L  L+  +D+L+ E  KF  Y + V
Sbjct: 204 ALVSAFMTELEPESPVSQCDFDRLKLSTAPFMERNLEFLIGCMDDLSSEQNKFQYYYRNV 263

Query: 801 VRQQQDKHRWMVKRAQENAARAAKDXXPLPEED-VNKLFKPHP 926
            RQQ  +  W+ KR QEN AR A    PLPEED  N +FKP P
Sbjct: 264 SRQQSQQQAWLQKRRQENMARKAAGEEPLPEEDPSNPIFKPIP 306


>04_04_1468 +
           33811471-33811657,33811888-33811980,33812899-33813027,
           33813089-33813166,33813377-33813435,33813522-33813644,
           33814225-33814282,33814383-33814468,33814564-33814635
          Length = 294

 Score = 32.7 bits (71), Expect = 0.58
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +3

Query: 108 TIQXVQCXGLAVMKIVKHCHEXSCSNMEVAQGALLGLVVENRLEITNCFPFPKHDDTMDE 287
           T++ V    L ++ IV H +  +    +   G LLG      +++TN +  P  +D  D 
Sbjct: 13  TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDP 72

Query: 288 EEYQLD 305
             + LD
Sbjct: 73  RIWFLD 78


>11_06_0110 + 20212221-20214011,20214072-20214368
          Length = 695

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
 Frame = +3

Query: 372 VGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKA-YRLTPQAIAMYKEG--D 542
           +GN LSL +L+  Y+   S + ++ ++    K+      L   YRL    I+   E    
Sbjct: 296 LGNMLSLQVLDFSYNMSVSKKGNMCIMKANLKNLCNLEVLDLDYRLAYGEISEIFESLPQ 355

Query: 543 YTPEALRNLKIGYENLFIEVP-IVIRNSPLTNIMI--SELTEMIPEEEG 680
            +P  L+ L +   NL   +P +V R + L  + +  + +T  +P E G
Sbjct: 356 CSPNKLKELHLANNNLTGNLPKLVGRLTSLVTLDLFNNNITGQVPSEIG 404


>07_01_0213 -
           1573315-1573485,1573583-1573765,1573858-1574046,
           1574182-1574263,1574315-1574421,1575086-1575161,
           1575457-1575637,1575711-1575828
          Length = 368

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +3

Query: 348 VGWYQSADVGNFLSLSLLESQYH--YQTSIEESVVVIYDTKKSARGFLTLKAYR 503
           VGWY+S + G +   S  +S +H  ++     +++V  D  KSA G  T+ A+R
Sbjct: 166 VGWYRS-NPGFYGRPSNHDSVFHKAFEQLNPRAILVAVDPVKSATGNFTMNAFR 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,066,701
Number of Sequences: 37544
Number of extensions: 543802
Number of successful extensions: 1291
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3608253564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)