Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_G20
(1178 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic in... 167 2e-41
Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical pr... 41 0.002
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 30 2.8
AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical... 30 3.7
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with... 29 6.4
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with... 29 6.4
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi... 29 6.4
>AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic
initiation factor protein3.H protein.
Length = 365
Score = 167 bits (405), Expect = 2e-41
Identities = 102/295 (34%), Positives = 171/295 (57%), Gaps = 24/295 (8%)
Frame = +3
Query: 108 TIQXVQCXGLAVMKIVKHCH-EXSCSNMEVA----QGALLGLVV--ENRLEITNCFPFPK 266
+++ + L VMKIVKH E EV+ G L GLV ++RLEITNCFP +
Sbjct: 11 SVKHILLDSLVVMKIVKHVDSELHAGISEVSGDACAGVLTGLVFLEDSRLEITNCFPTVR 70
Query: 267 HDDTMDEE-----EYQ-------LDMMRRLRRVNVDHFHVGWYQSADVGNFLSLSLLESQ 410
++ MD++ +Y+ LDM+R+ R +N+D+ VG+YQS G S L+ES
Sbjct: 71 NEPVMDDDANAAQQYEEQKQHEMLDMLRKFRTMNIDYEIVGFYQSHQFGAGFSHDLVESM 130
Query: 411 YHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENL 590
+ YQ E+VV+IYD K+ +G L+L+A+RL+ A+ + + D+ PE ++ + Y+N+
Sbjct: 131 FDYQAMGPENVVLIYDPIKTRQGQLSLRAWRLSTAALDLASKNDWRPELVKAAGLTYQNM 190
Query: 591 FIEVPIVIRNSPLTNIMISELT---EMIPEEEGSKFLDLGTASVLEGQLRSLMERVDELN 761
F E+PI+I++S L N+++SEL+ ++ ++ DLG+ LE +R++M VDELN
Sbjct: 191 FEELPIIIKSSYLNNVLMSELSLAKSCSSDKYSTRHFDLGSKKSLEKSVRAMMANVDELN 250
Query: 762 QEAIKFNRYQQLVVRQQQDKHRWMV--KRAQENAARAAKDXXPLPEEDVNKLFKP 920
+ +Y + +Q+ D + + KR QEN +R A+ +P +D+ ++ P
Sbjct: 251 KSIQSLTKY--TIDKQRHDNMVFSLTQKRQQENESRVARGDPTIPMDDIKRIKAP 303
>Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical
protein D2013.7 protein.
Length = 294
Score = 40.7 bits (91), Expect = 0.002
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Frame = +3
Query: 180 SNMEVAQGALLGLVVENRLEITNCFPFP---KHDDTMDEEEYQLDMMRRLRRVNVDHFHV 350
+ E G L+G + +++TNCF P +DD ++++ M+ L++ + + V
Sbjct: 32 TGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTSPNEQPV 91
Query: 351 GWYQSADVGNFLSLSLLESQYHYQTSIEES 440
GW+ + + S L+ Y+ + E S
Sbjct: 92 GWFLT--TSDITSSCLIYHDYYVRVITEAS 119
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 30.3 bits (65), Expect = 2.8
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +3
Query: 423 TSIEESV-VVIYDTKKSARGFLTLKAYRLTPQA-IAMYKEGDYTPEALRNLKIGYENLFI 596
T+I ES I+ T+ S LTL + + TP A IA E + TP+ ++ + ++ +
Sbjct: 475 TAIAESQDFPIHSTENSTTSMLTLTSMKYTPDAPIAQLNEAEETPQLPSDVPMLFQEREL 534
Query: 597 EVPIVIRNSPLTNIMISELTEMIPEEEGS 683
V ++ + NI ++ + + GS
Sbjct: 535 PVSMMSTTVNVENIKGEQIPVNVFFDSGS 563
>AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical
protein Y105C5A.24 protein.
Length = 478
Score = 29.9 bits (64), Expect = 3.7
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Frame = +3
Query: 603 PIVIRNSPLTNIMISELTEMIP----EEEGSKFLDLGTASVLEGQLRSLMERVDELNQEA 770
P++ R + +++ ++ IP +E S FL GT V+E + + R D A
Sbjct: 16 PVIQRKTRDSDLCLTSDIPKIPPNCIDELNSHFLGKGTFGVVE-KTKYRKTRDDTYRPAA 74
Query: 771 IKFNRYQQLVVRQQQDKHRWMVK 839
IK+ L + +++ KH W ++
Sbjct: 75 IKYASATHLSILKREAKHMWNLR 97
>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform a
protein.
Length = 2322
Score = 29.1 bits (62), Expect = 6.4
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 338 INIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSL-SHLH 186
I DS V+L +IH V+ W E V T+L+ TK S L S +H
Sbjct: 582 IGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKWSELTSDIH 633
>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform b
protein.
Length = 2019
Score = 29.1 bits (62), Expect = 6.4
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 338 INIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSL-SHLH 186
I DS V+L +IH V+ W E V T+L+ TK S L S +H
Sbjct: 582 IGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKWSELTSDIH 633
>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
nonsense-mediated mRNA decay proteinSMG-1 protein.
Length = 2322
Score = 29.1 bits (62), Expect = 6.4
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 338 INIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSL-SHLH 186
I DS V+L +IH V+ W E V T+L+ TK S L S +H
Sbjct: 582 IGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKWSELTSDIH 633
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,767,885
Number of Sequences: 27780
Number of extensions: 449457
Number of successful extensions: 1165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3224247522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -