Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_G18
(1185 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0434 - 3302926-3303072,3303402-3303545,3303644-3304293,330... 34 0.19
03_01_0380 + 2955102-2955357,2955468-2956189 33 0.44
09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,250... 31 1.8
05_04_0274 - 19636163-19636280,19636359-19636423,19636485-196366... 31 2.3
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235... 30 3.1
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178... 30 4.1
10_04_0002 - 7372425-7372601,7372697-7372780,7372859-7373010,737... 29 7.1
06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63... 29 7.1
05_03_0061 + 7912322-7912658,7914617-7914747,7914875-7914938,791... 29 9.4
02_05_1238 + 35151605-35151613,35151682-35151982,35152067-351523... 29 9.4
>07_01_0434 -
3302926-3303072,3303402-3303545,3303644-3304293,
3304410-3304493,3304651-3304703,3305127-3305197,
3305285-3305362,3305775-3305903,3305988-3306044,
3306693-3306923,3307748-3307882,3308609-3308684,
3308768-3309024,3309095-3309202,3309328-3309526,
3309600-3309604
Length = 807
Score = 34.3 bits (75), Expect = 0.19
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Frame = +1
Query: 187 MDKILDGDEIIKENSKRKRSCEEIVSANNKRSKTEDNDGHQISQDSTSNDSIENLNIPA- 363
M ++ G +++K+ CE+ A K +DN SQ + S + LN+ A
Sbjct: 324 MSYVISGAKMLKQQGNELHRCEQYSEAAAKYKLAKDNLKSIPSQSAHSLQLVCTLNLMAC 383
Query: 364 --KNTSLIVSENINNVYKNYDEVENKPVYKNGDPIVVEIDNKDKP-GSVNNNHDMIDDSE 534
K + N + YD K Y+ G E+ N + G ++ H++ D E
Sbjct: 384 YLKTRNFEECINEGSEVLTYDSSNVKAYYRRGQ-AYKELGNLEAAVGDLSKAHELSPDDE 442
Query: 535 T 537
T
Sbjct: 443 T 443
>03_01_0380 + 2955102-2955357,2955468-2956189
Length = 325
Score = 33.1 bits (72), Expect = 0.44
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = +1
Query: 232 KRKRSCEEIVSANNKRSKTEDN-----DGHQISQDSTSNDSIENLNIPAKNTSLIVSENI 396
K+K+ ++ + S + DN DG S D +S+DS + + +T+ V EN
Sbjct: 140 KKKKKKNSNINPKDAASSSSDNEENSLDGESDSSDESSDDSGSSESSEHTHTAPFVQENS 199
Query: 397 NNVYKNYDEVENKPVYKNGDPIVVEIDNKDKPGSV 501
+ K + PV N + + +D+ D+ ++
Sbjct: 200 SPALKRKKMPSSSPVDSNLKKVRIALDSDDEDENI 234
>09_01_0175 -
2509014-2509064,2509389-2509490,2509603-2509729,
2509852-2511564,2512335-2512424,2512533-2512801,
2513118-2513687,2513703-2514065
Length = 1094
Score = 31.1 bits (67), Expect = 1.8
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 208 DEIIKENSKRKRSCEEIVSANNKRSKTEDNDGHQISQDSTSNDSIE-NLNIPAKNTSLIV 384
DE++ EN + R ++ + K D+ HQ+ T N+ E I A + + I
Sbjct: 685 DEVLVENKRTIRIKSDVFPGQQDKIKVVDSHNHQLQGAPTDNEEEECTTLIKASHFTPIE 744
Query: 385 SENINNVYKNYDEVENKPV 441
+ +N + + ++E+ +
Sbjct: 745 TNYLNQIRRLESDIEDASI 763
>05_04_0274 -
19636163-19636280,19636359-19636423,19636485-19636637,
19636738-19637043,19637137-19637314,19637452-19637687,
19637835-19638032,19638171-19638293,19638729-19639013,
19639186-19639326,19639799-19640188,19640465-19640647,
19640934-19641020
Length = 820
Score = 30.7 bits (66), Expect = 2.3
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +1
Query: 292 DNDGHQISQDSTSNDSIENLNIPAKNTSLIVSENINNVYKNYDEVENKPVYKN---GDPI 462
+ D + + S +E LN P + T L NIN + Y EV KPV++N G P+
Sbjct: 386 NTDKNSSLEKEFSKSFLEVLNRP-EQTGLF---NINTQFPYYREVLYKPVFRNVSRGKPV 441
Query: 463 VVEID 477
+ ++D
Sbjct: 442 IFDMD 446
>08_02_0499 -
17820615-17822516,17823224-17823373,17823491-17823568,
17823948-17824061,17824145-17824297,17826928-17827071,
17827162-17827516,17828574-17828741,17829522-17829751,
17829916-17830049,17830686-17830749
Length = 1163
Score = 30.3 bits (65), Expect = 3.1
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 250 EEIVSANNKRSKTEDNDGHQISQDSTSNDSIENLNIPAKNTSLIVSE 390
E + NNKR +TE+ + +SQD + D+I + +TSL+V +
Sbjct: 567 ENSLQENNKRRRTEN---YIVSQDDSPKDAITLKQLSKSDTSLLVDK 610
>03_05_0226 -
22115285-22115404,22115477-22116661,22117037-22117861,
22118029-22118106,22118370-22118420,22118510-22118581,
22118666-22118667,22119453-22119557,22119668-22119749,
22120178-22120227,22120514-22120567,22121084-22121164,
22121567-22121656,22121884-22121964,22122304-22122544
Length = 1038
Score = 29.9 bits (64), Expect = 4.1
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 208 DEIIKENSKRKRSCEEIVSANNKRSKTEDNDGHQISQDSTSN-DSIENLNIPAKNTSLIV 384
DE +++N + + +N + + ++ +I +T+N D++E+ ++ A N ++
Sbjct: 306 DEDLEDNELENWNLDMFNLSNGQNVQNSADNSTEIGNQATTNVDTVESNDLDA-NGEMLT 364
Query: 385 SENINNVYKNYDEVENK 435
E+INN + E K
Sbjct: 365 EEDINNFLEQEQEEATK 381
>10_04_0002 -
7372425-7372601,7372697-7372780,7372859-7373010,
7373229-7373324,7373406-7373554,7373723-7373788,
7373925-7373994,7374106-7374236,7376464-7376471,
7377946-7378002
Length = 329
Score = 29.1 bits (62), Expect = 7.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 340 IENLNIPAKNTSLIVSENINNVYKNYDEVENKPVYK 447
I N+PA+N S ++SE+ + VY + + + +YK
Sbjct: 190 IPTANLPAENFSDVLSEHTSRVYFGWAGLSTRGIYK 225
>06_01_0079 -
633595-633985,634346-634543,634864-635036,635355-635599,
635683-635860,636291-636473,636769-636873,637709-637846,
637933-638925
Length = 867
Score = 29.1 bits (62), Expect = 7.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 217 IKENSKRKRSCEEIVSANNKRSKTEDNDGHQISQDSTSN 333
+ +R+RS E + SA ++D+D +SQ+S N
Sbjct: 106 VAAQGRRRRSSESVDSAPQNEGFSDDDDSCSVSQESAHN 144
>05_03_0061 +
7912322-7912658,7914617-7914747,7914875-7914938,
7915286-7915512,7915869-7916396,7916860-7916919
Length = 448
Score = 28.7 bits (61), Expect = 9.4
Identities = 23/92 (25%), Positives = 45/92 (48%)
Frame = +1
Query: 211 EIIKENSKRKRSCEEIVSANNKRSKTEDNDGHQISQDSTSNDSIENLNIPAKNTSLIVSE 390
+ + + R+R E SA ++ + +DG+ +SQDS + +EN++ N S E
Sbjct: 142 QFLLSDEDRRRVQEMRNSAVKRKQQELLSDGYVLSQDSLLSKQVENIS----NISREGDE 197
Query: 391 NINNVYKNYDEVENKPVYKNGDPIVVEIDNKD 486
+ + D+++ K V+ I+V+ KD
Sbjct: 198 SSVRKSMSLDDLQEKAVF---SAIIVDPQMKD 226
>02_05_1238 +
35151605-35151613,35151682-35151982,35152067-35152392,
35153059-35153155,35153244-35153581
Length = 356
Score = 28.7 bits (61), Expect = 9.4
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 202 DGDEIIKENSKRKRSCEEIVSANNKRSKTEDN 297
DGDE KE+ K+K+ EE + K+ K +DN
Sbjct: 178 DGDEAGKEDKKKKKEKEE--QDDQKKKKAKDN 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,113,151
Number of Sequences: 37544
Number of extensions: 446482
Number of successful extensions: 1168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3608292120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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