Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_G18
(1185 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23454-2|AAC46519.2| 368|Caenorhabditis elegans Hypothetical pr... 33 0.52
Z69659-1|CAA93483.1| 329|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z70212-1|CAA94162.1| 406|Caenorhabditis elegans Hypothetical pr... 30 3.7
Z81077-12|CAH19097.1| 316|Caenorhabditis elegans Hypothetical p... 29 4.9
Z77656-4|CAH04701.1| 536|Caenorhabditis elegans Hypothetical pr... 29 4.9
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 29 4.9
U13875-12|AAA21157.2| 321|Caenorhabditis elegans Hypothetical p... 29 6.4
U41993-1|AAO12433.1| 390|Caenorhabditis elegans Hypothetical pr... 29 8.5
>U23454-2|AAC46519.2| 368|Caenorhabditis elegans Hypothetical
protein C10A4.5 protein.
Length = 368
Score = 32.7 bits (71), Expect = 0.52
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 13/115 (11%)
Frame = +1
Query: 220 KENSKRKRSCEEIVSANNKRSKT-EDNDGHQISQDSTSNDSIEN--------LNIPAKNT 372
+ N S + I S NN+ S T E+NDG+ Q N +N N+ A
Sbjct: 239 ESNEASIESRDPIHSRNNRSSNTNENNDGNTNDQTDYENKETDNERSGNETTSNLSANQM 298
Query: 373 SLIVSENINNVYKNY----DEVENKPVYKNGDPIVVEIDNKDKPGSVNNNHDMID 525
+IVSE + N + D + +Y++ +E+ N S +D D
Sbjct: 299 RIIVSEAVQNAMAHLIAVSDRAQTSSLYQSVVVNEIELQNTSSSQSETQEYDKED 353
>Z69659-1|CAA93483.1| 329|Caenorhabditis elegans Hypothetical
protein F07C6.1 protein.
Length = 329
Score = 31.5 bits (68), Expect = 1.2
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 586 CNICGQFLNNSDLIYYQGHPQDAVEEYIALTNDKLVLSS 702
CN C Q ++NSDL+ YQ +P A + T K VL S
Sbjct: 143 CNKCKQHVDNSDLLTYQENPYHAY--HFKCTTCKKVLES 179
>Z70212-1|CAA94162.1| 406|Caenorhabditis elegans Hypothetical
protein R04D3.2 protein.
Length = 406
Score = 29.9 bits (64), Expect = 3.7
Identities = 27/83 (32%), Positives = 36/83 (43%)
Frame = +1
Query: 208 DEIIKENSKRKRSCEEIVSANNKRSKTEDNDGHQISQDSTSNDSIENLNIPAKNTSLIVS 387
DE EN + E N+RS+ ED D +D DS N A+ +
Sbjct: 306 DESDNENEDNEED-ESKPRMTNRRSRNEDEDDFFDDED----DSKPQRNPKARRGN---E 357
Query: 388 ENINNVYKNYDEVENKPVYKNGD 456
+N +N +YDEVEN Y N D
Sbjct: 358 KNFDNA-DSYDEVENDDDYDNLD 379
>Z81077-12|CAH19097.1| 316|Caenorhabditis elegans Hypothetical
protein F36A2.14 protein.
Length = 316
Score = 29.5 bits (63), Expect = 4.9
Identities = 16/70 (22%), Positives = 31/70 (44%)
Frame = +1
Query: 196 ILDGDEIIKENSKRKRSCEEIVSANNKRSKTEDNDGHQISQDSTSNDSIENLNIPAKNTS 375
+ DG E K+ +R + ++ ++ K SK D Q S D+T + +K
Sbjct: 78 VTDGSEEKKKKKERMKKSKDESGSSRKNSKKTAEDMDQSSDDTTKPAEETKKTVSSKKQK 137
Query: 376 LIVSENINNV 405
+ SE +++
Sbjct: 138 KVKSEECDHL 147
>Z77656-4|CAH04701.1| 536|Caenorhabditis elegans Hypothetical
protein F07B10.5 protein.
Length = 536
Score = 29.5 bits (63), Expect = 4.9
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 364 KNTSLIVSENINNVYKNYDEVENKPVYKNGDPIVVEID 477
K + V+ +NNV KNYD+ +P + +G P V ID
Sbjct: 56 KGVAQNVTHLLNNVLKNYDQ-HFRPGFNSGKPTKVYID 92
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 29.5 bits (63), Expect = 4.9
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Frame = +1
Query: 217 IKENSKRKRSCEEIVSANNKRSKTEDNDGHQISQDSTS------NDSIENLNIPAKNTS- 375
++++SKR S E A R TE+ ++ STS N IEN N+S
Sbjct: 19 LRKSSKRTASTVEGTEAKQMRGDTENRSDGEMDDVSTSSEIRHGNGFIENFRSQTGNSSR 78
Query: 376 -LIVSENINN--VYKNYDEVENKPVYKNGDPIVVEIDNKDKPGSVNNNHDMIDDS 531
+E I V KN+ N+ GD ID+ D GSV + ++ D+
Sbjct: 79 TTATNERIKKKLVIKNFKANANQNDVAMGD---TNIDSTD--GSVGRDWAVLSDN 128
>U13875-12|AAA21157.2| 321|Caenorhabditis elegans Hypothetical
protein C26E6.3 protein.
Length = 321
Score = 29.1 bits (62), Expect = 6.4
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3
Query: 730 VVPLCLHLPQSSKQVCH*SMQYILQQHLVGDLG-NKLSQNYLKIGHICYI 584
++PLCL + + ++ +ILQ+ L+ D G + Q Y + H+ I
Sbjct: 175 IIPLCLRIMEQGTELSKTVATFILQKILLDDTGLLYICQTYERFSHVVLI 224
>U41993-1|AAO12433.1| 390|Caenorhabditis elegans Hypothetical
protein F44A2.5b protein.
Length = 390
Score = 28.7 bits (61), Expect = 8.5
Identities = 22/75 (29%), Positives = 36/75 (48%)
Frame = +1
Query: 211 EIIKENSKRKRSCEEIVSANNKRSKTEDNDGHQISQDSTSNDSIENLNIPAKNTSLIVSE 390
+I+KE + K+ C E S +++ S N H S D SN S++ + S + SE
Sbjct: 76 QILKEENNNKKDCGE--STSSRASSRASN--HVSSDDRHSNGSLK------RTESSLSSE 125
Query: 391 NINNVYKNYDEVENK 435
+ + K+Y NK
Sbjct: 126 STPSSQKSYGSNSNK 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,161,656
Number of Sequences: 27780
Number of extensions: 448141
Number of successful extensions: 1500
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3245116438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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