Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_G16
(1250 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.012
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.25
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.33
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.58
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.8
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 5.4
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 7.2
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.9 bits (79), Expect = 0.012
Identities = 39/177 (22%), Positives = 43/177 (24%), Gaps = 4/177 (2%)
Frame = +1
Query: 361 PPPPGXXLLXGGPSXXKKXPGGPPRAXXXXGGXPPPKKPAXXXXGPAQKNXLPXXXXNXQ 540
PP P P P PP P P+ PA P +
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVA 1100
Query: 541 GGAXKKKSPXXAPKTXPXRRPXXP----GXPPXXQKXXXXAPPPXRXXGPXPXXXXXXXX 708
K S P P P P PP APP + P
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV--PVPSGAPPVPKPSVAAPPVPAPSGA 1158
Query: 709 PPPPXXGGGGXPXQNXXPXXXXXXXPXXXPXRXXXKXXPPXXXPPXXKXTXXXPPPP 879
PP P P P P P PP PP K + PP P
Sbjct: 1159 PPVPKPSVAAPP----VPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211
Score = 33.5 bits (73), Expect = 0.062
Identities = 38/158 (24%), Positives = 41/158 (25%), Gaps = 5/158 (3%)
Frame = +1
Query: 421 GGPPRAXXXXGGXPPPKKPAXXXXGPAQKNXLPXXXXNXQGGAXKKKSPXXAPKTXPXRR 600
G PP G PP KP+ P K + GA P A P
Sbjct: 1081 GAPP--VPAPSGIPPVPKPSVAAP-PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPV-- 1135
Query: 601 PXXPGXPPXXQKXXXXAPPPXRXXGPXPXXXXXXXXPPPPXXGGG----GXPXQNXXP-X 765
P P K APP G P PP P G P P
Sbjct: 1136 ---PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP 1192
Query: 766 XXXXXXPXXXPXRXXXKXXPPXXXPPXXKXTXXXPPPP 879
P P PP PP + PP P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.25
Identities = 39/179 (21%), Positives = 43/179 (24%), Gaps = 3/179 (1%)
Frame = +1
Query: 358 PPPPPGXXLLXGGPSXXKKXPGGPPRAXXXXGGXPPPKKPAXXXXGPAQKNXLPXXXXNX 537
P PPP + + KK P PP G PP + P P N
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPP---PPPRSNA 347
Query: 538 QGGAXKKKSPXXAPKTXPXRRPXXPG-XPPXXQKXXXXAPPPXRXXGPXPXXXXXXXXPP 714
G AP P R G PP + PP P P
Sbjct: 348 AGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPP----APPPAIPGRSAPAL 403
Query: 715 PPXXGGG--GXPXQNXXPXXXXXXXPXXXPXRXXXKXXPPXXXPPXXKXTXXXPPPPRG 885
PP P P P P PP PP P G
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAG 462
Score = 31.5 bits (68), Expect = 0.25
Identities = 34/130 (26%), Positives = 38/130 (29%), Gaps = 6/130 (4%)
Frame = +1
Query: 346 GRXXPPPPPGXXLLXGGPSXXKKXPGGPPRAXXXXGGXPPP-----KKPAXXXXGPAQKN 510
GR PPPPP PS ++ P PPP PA G A +
Sbjct: 357 GRSAPPPPPP----RSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRT 412
Query: 511 XLPXXXXNXQGGAXKKKS-PXXAPKTXPXRRPXXPGXPPXXQKXXXXAPPPXRXXGPXPX 687
P S P AP + P P P PP APP P
Sbjct: 413 STPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP----SAPIAPPLPAGMPAAPP 468
Query: 688 XXXXXXXPPP 717
PPP
Sbjct: 469 LPPAAPAPPP 478
Score = 30.7 bits (66), Expect = 0.44
Identities = 34/151 (22%), Positives = 37/151 (24%)
Frame = +2
Query: 611 PAPPPXXKXTXGRXPPPPGXXAXXPPXXXXXXXPPPPXXGGGGPXXKTXXPXXXGXXXXX 790
PAPPP + G PP PP P P P
Sbjct: 251 PAPPPIPPPSNGTVSSPPNS----PPRPIAPVSMNPAINSTSKP------PLPPPSSRVS 300
Query: 791 XXPXAAXKKXXPPXXXPXXXXXXXXXPPPPGXKKKXXXXXGGGXXXXXXPXXXXXPXXXX 970
AA KK PP PPPP + + G G P P
Sbjct: 301 AAALAANKKRPPP-------------PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNA 347
Query: 971 XXXXXXPPXXXKKTXPPXXXXGGGXXXXPPP 1063
PP PP PPP
Sbjct: 348 AGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.33
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = +3
Query: 606 SPRXPPXXXKXXXXGXPPXPXXGPXXXPPXXXXXPPPPXXGGGGXPXTKXXPP 764
SP PP P P P PPPP G G P PP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.9 bits (64), Expect = 0.77
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +1
Query: 358 PPPPPGXXLLXGGPSXXKKXPGGPPRAXXXXGGXPPPKKPAXXXXGP 498
PPPPP + P+ PP A G PPP P GP
Sbjct: 733 PPPPPAVIVPTPAPAPIPV----PPPAPIMGGPPPPPPPPGVAGAGP 775
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +2
Query: 647 RXPPPPGXXAXXPPXXXXXXXPPPPXXGGGGPXXKTXXPXXXG 775
+ PPPP P PPP GGP P G
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 1017 PPXXXGGGXXXPPPPP 1064
PP G G PPPPP
Sbjct: 767 PPGVAGAGPPPPPPPP 782
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.3 bits (65), Expect = 0.58
Identities = 23/69 (33%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Frame = -2
Query: 712 GGXXXXXGGXXXGPXSGXGGXPXXXXFXXXG---GXRGDXAFXXGXFXGPXXGFFFXGPP 542
GG GG GP G GG F G G G G F G G F G P
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG--FGGGP 244
Query: 541 LGXXGXXXG 515
G G G
Sbjct: 245 GGFGGGLGG 253
Score = 29.5 bits (63), Expect = 1.0
Identities = 27/82 (32%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Frame = -2
Query: 763 GGXXFVXGXPPP-PXXGGGGXXXXXGGXXXGPXSGXGGXPXXXXF--XXXGGXRGDXAFX 593
GG G PPP P GG G G G GG P GG G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Query: 592 XGXFXGPXXGFFFXGPPLGXXG 527
G F G G F G P G G
Sbjct: 251 LGGFGGGPGG--FGGGPGGHGG 270
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.1 bits (62), Expect = 1.3
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 648 GXPPXPXXGPXXXPPXXXXXPPPP 719
G PP P P PP PPPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPP 30
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/66 (28%), Positives = 23/66 (34%)
Frame = +1
Query: 427 PPRAXXXXGGXPPPKKPAXXXXGPAQKNXLPXXXXNXQGGAXKKKSPXXAPKTXPXRRPX 606
PP + PPP PA P++ +P A KSP AP P
Sbjct: 139 PPTSAPPRPSIPPPS-PASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPM 197
Query: 607 XPGXPP 624
P PP
Sbjct: 198 PPKVPP 203
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/53 (28%), Positives = 15/53 (28%)
Frame = +1
Query: 562 SPXXAPKTXPXRRPXXPGXPPXXQKXXXXAPPPXRXXGPXPXXXXXXXXPPPP 720
SP AP P PP Q PP P PPPP
Sbjct: 153 SPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.1 bits (57), Expect = 5.4
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 57 FGXLXXXXFXFFFFFFFFXXXFFFXXFFXFXXXXWXFFLF 176
F L F F F F FF F F F + FF F
Sbjct: 121 FFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFF 160
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Frame = +1
Query: 358 PPPPPGXXLLXGGPSXXKK----XPGGPPRAXXXXGGXPPPKKP 477
PPPPP L GP P GPP G P P
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAP 1925
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.149 0.512
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,130
Number of Sequences: 5004
Number of extensions: 29577
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 677627698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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