Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_G15
         (1232 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po...    26   9.3  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   9.3  

>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 179 IAALLESTAETEKEIAEQLEVCKRELD 259
           +  L +  ++ EKE  + LE+CKR LD
Sbjct: 77  VPRLSQLVSKWEKEGVDSLEICKRVLD 103


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 158  DAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEA 265
            D +KR  +  L E    + KE+A+QLE   RE D A
Sbjct: 1014 DLNKR--VEVLKEEKESSSKELAKQLEDAVREKDSA 1047


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,758
Number of Sequences: 5004
Number of extensions: 38679
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)