Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_G14
         (1173 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0403 + 3179513-3179570,3181576-3181737,3182721-3182920          119   5e-27
08_01_0203 + 1639993-1641141                                           30   3.1  

>05_01_0403 + 3179513-3179570,3181576-3181737,3182721-3182920
          Length = 139

 Score =  119 bits (286), Expect = 5e-27
 Identities = 62/112 (55%), Positives = 74/112 (66%), Gaps = 2/112 (1%)
 Frame = +1

Query: 439 RTMFIQTQXTPNPNSLKFLPGTKVLEPGQTLDFPNIGAAHCSPLAKMLFRIDGVKAVFFG 618
           R MFIQTQ TPNP SL F PG  V+E G + DFPN   A  SPLAK LF IDGV  VFFG
Sbjct: 23  RGMFIQTQSTPNPQSLMFYPGKPVMEVGSS-DFPNARTAMTSPLAKALFAIDGVTRVFFG 81

Query: 619 PEFITVTKQDDDVDWKLLKPEIFGTIMDFFASGLPVVTDAK--PSGDTQINE 768
            +F+TVTK  ++  W  LKPE+F  IMDF++SG  +  D+    S DT I+E
Sbjct: 82  SDFVTVTK-SEETSWDYLKPEVFAVIMDFYSSGQSLFLDSSTAASMDTAIHE 132


>08_01_0203 + 1639993-1641141
          Length = 382

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 27/95 (28%), Positives = 43/95 (45%)
 Frame = +1

Query: 550 AAHCSPLAKMLFRIDGVKAVFFGPEFITVTKQDDDVDWKLLKPEIFGTIMDFFASGLPVV 729
           AAH + LA    R    KA  +GP   +       V    ++P +F  ++ F      + 
Sbjct: 204 AAHRAVLA---MRSPVFKAALYGPMKESTDANAGRVAIDSVEPAVFRALLHF------IY 254

Query: 730 TDAKPSGDTQINEDDDEIVQMIKELLDTRIRPTVQ 834
           TD   + D  +++DDD+  QMI  LL+   R  V+
Sbjct: 255 TDTTAAMD-DLDDDDDDKAQMIMHLLEAADRYDVE 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,755,225
Number of Sequences: 37544
Number of extensions: 394266
Number of successful extensions: 796
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3584899172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)