Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_G13
         (1256 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    29   1.0  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    28   3.1  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   4.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   5.4  

>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 576 PHQRDSSIISMHVAFSSGPNNVKFCVVISNSTLTGSALWRVEFG 445
           P Q   ++++ +  FS+G   V  C+ +    L  +A WR  FG
Sbjct: 140 PPQIRGAVVATYQIFSTGAALVAACINMGTHKLRKTASWRTSFG 183


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 223 CRRKGF*QTYTSFGELPGYFECFVSKHRIQNYLNLQ 116
           C +KG  Q   SF   P  F+CF+S    Q++  LQ
Sbjct: 349 CAQKGIDQFAHSFLRTP-MFDCFISSESFQSFFILQ 383


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
 Frame = +2

Query: 221 ARDAVLEFFSIVFQEAVNVAISQTDYEADPNANSLLESVSMIGPELCNLGESWAPFIAPW 400
           A DAV +F S    + V       + +   N N   ++  +I PE CN  ES++ F+   
Sbjct: 604 ANDAVTDFTS----QTVQNLQEYLNEKRKLNVNFQFQTPLLIFPEDCNNPESFSLFVDAG 659

Query: 401 CVNLI---IDISTNKSNVPNSTLQSAEPVRVLLDITTQNLTLLGP 526
            +++    ++ +  +SN  + TL      R  + + +  L LLGP
Sbjct: 660 FISITSQNVETNDKESNSESETLYHLIYDRYRVSLESARL-LLGP 703


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 281  ISQTDYEADPNANSLLESVSMIGPELCNLGES-WAPFIAPWCVNLIIDISTNKS 439
            +   D+ ++ N+N+ LE    +     N   S W PF+ PW V + I  + N S
Sbjct: 1714 VDLNDWSSELNSNAHLE----LFMNFYNFSNSHWEPFLEPWKVGVHISRNPNTS 1763


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,719,749
Number of Sequences: 5004
Number of extensions: 67628
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 681602054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)