Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_G13
         (1256 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC060841-1|AAH60841.1| 1019|Homo sapiens integrator complex subu...    39   0.044
AB051485-1|BAB21789.1|  908|Homo sapiens KIAA1698 protein protein.     32   3.8  
BC040185-1|AAH40185.1|  666|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ...    31   8.8  

>BC060841-1|AAH60841.1| 1019|Homo sapiens integrator complex subunit
           5 protein.
          Length = 1019

 Score = 38.7 bits (86), Expect = 0.044
 Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 32/159 (20%)
 Frame = +2

Query: 185 KTGICLLKTFPAARDAVLEFFSIVFQEAVNVAISQTDYE------------------ADP 310
           + G+ LL++ P AR AVL+    VF E+V   ++  D                      P
Sbjct: 57  RCGLLLLRSLPPARAAVLDHLRGVFDESVRAHLAALDETPVAGPPHLRPPPPSHVPAGGP 116

Query: 311 NANSLLESVSMIGPELCNLG-ESWAPFIAPWCVNLIIDISTNKS----NVPNST------ 457
               +++ V  +  E      ++WAP I+ W ++L+  +S+  S     VP++T      
Sbjct: 117 GLEDVVQEVQQVLSEFIRANPKAWAPVISAWSIDLMGQLSSTYSGQHQRVPHATGALNEL 176

Query: 458 LQ---SAEPVRVLLDITTQNLTLLGPEEKATCIDMMLES 565
           LQ        R L+DI  Q L+ L       C+D +L++
Sbjct: 177 LQLWMGCRATRTLMDIYVQCLSALIGSCPDACVDALLDT 215


>AB051485-1|BAB21789.1|  908|Homo sapiens KIAA1698 protein protein.
          Length = 908

 Score = 32.3 bits (70), Expect = 3.8
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
 Frame = +2

Query: 308 PNANSLLESVSMIGPELCNLG-ESWAPFIAPWCVNLIIDISTNKS----NVPNST----- 457
           P    +++ V  +  E      ++WAP I+ W ++L+  +S+  S     VP++T     
Sbjct: 5   PGLEDVVQEVQQVLSEFIRANPKAWAPVISAWSIDLMGQLSSTYSGQHQRVPHATGALNE 64

Query: 458 -LQ---SAEPVRVLLDITTQNLTLLGPEEKATCIDMMLES 565
            LQ        R L+DI  Q L+ L       C+D +L++
Sbjct: 65  LLQLWMGCRATRTLMDIYVQCLSALIGSCPDACVDALLDT 104


>BC040185-1|AAH40185.1|  666|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 51 protein.
          Length = 666

 Score = 31.1 bits (67), Expect = 8.8
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
 Frame = +2

Query: 260 QEAVNVAISQTDYEADPNANSLLESVSMIGPELC--NLGESWAPFIAPWCVNLIIDISTN 433
           +EA  V  +    EA P+  +L E+   + P L     G+  AP + P+    + + +  
Sbjct: 129 EEAPGVRSTSASAEAAPDGPALEEAAGPLVPGLVLGGFGKRKAPKVKPFLPRWLAEPNCV 188

Query: 434 KSNVPNSTLQSAEPVRVLLDITTQ----NLTLLGPEEKATCIDMMLESRWCGWAVGR 592
           + NV    +   +   V  D+  Q     ++   P + A  I  +LES  CG+ VGR
Sbjct: 189 RRNVTEDLVPIEDIPDVHPDLQKQLRAHGISSYFPVQAAV-IPALLESAACGFLVGR 244


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,298,905
Number of Sequences: 237096
Number of extensions: 2558881
Number of successful extensions: 4657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4654
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17945070980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)