Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_G13
         (1256 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-12|CAA87044.3|  539|Caenorhabditis elegans Hypothetical p...    32   0.74 
AF106575-5|AAC78171.1|  421|Caenorhabditis elegans Hypothetical ...    31   1.7  

>Z46934-12|CAA87044.3|  539|Caenorhabditis elegans Hypothetical
           protein ZK1320.6 protein.
          Length = 539

 Score = 32.3 bits (70), Expect = 0.74
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 81  DNEHLQQVHCTICRFK*FCIRCFETKHSKYPGSSPKLVYVC*KP 212
           D+EH+  ++CT+C     C RC E+ HS    S  + + +  KP
Sbjct: 111 DSEHVAVIYCTVCDSN-LCERCSESTHSTNVLSKHRRIPLTEKP 153


>AF106575-5|AAC78171.1|  421|Caenorhabditis elegans Hypothetical
           protein K04F1.12 protein.
          Length = 421

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 356 LCNLGESWAPFIAPWCVNLIIDISTNKSNVPN-STLQSAEPVRVLLDITTQNLT 514
           LCN+  S    I   CVNL+ D+  ++SN  +   L S E +   L I   NLT
Sbjct: 262 LCNIENSTLSEINSTCVNLVGDLIIDESNEEHVQKLNSVESIFGSLTIDNTNLT 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,090,011
Number of Sequences: 27780
Number of extensions: 395188
Number of successful extensions: 886
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3495543430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)