Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_G11
(1222 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.4
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776 31 2.4
11_06_0610 - 25449085-25453284 30 4.2
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 4.2
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 7.4
01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982 29 7.4
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 29 9.8
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.5 bits (68), Expect = 1.4
Identities = 18/65 (27%), Positives = 19/65 (29%)
Frame = +1
Query: 715 PPP*XXKKTXXPSXGGTPPLTEXXXXFPPPXNPXXXPSSXXXYXKXKXXXPPPGGXGGXX 894
PPP P PP + PPP P P K PPP G
Sbjct: 330 PPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRP 389
Query: 895 PXXXG 909
P G
Sbjct: 390 PAAPG 394
>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
Length = 429
Score = 30.7 bits (66), Expect = 2.4
Identities = 26/95 (27%), Positives = 27/95 (28%), Gaps = 8/95 (8%)
Frame = -2
Query: 1134 FFFXGXXXPPPXKXFFPXPXPXFXFXXPVXXPXKKXFXPGXXXXFXSFXPP-----XXXX 970
F+ PPP FP P P P PG F F PP
Sbjct: 189 FYMQRPPTPPPTPRGFPPPLPSPGAGAPRGGSATPAMIPGHPGAFYPFPPPSLPGVGPPR 248
Query: 969 GXVFFPXLGWGXXF---PXXXQPSXXXXXXPPPXP 874
G P L G F P P PPP P
Sbjct: 249 GGGAIPGLPAGFPFLLRPPPPLPVPGVICRPPPSP 283
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.9 bits (64), Expect = 4.2
Identities = 19/85 (22%), Positives = 24/85 (28%)
Frame = +1
Query: 715 PPP*XXKKTXXPSXGGTPPLTEXXXXFPPPXNPXXXPSSXXXYXKXKXXXPPPGGXGGXX 894
PPP + P +PP PPP P + PPP G
Sbjct: 841 PPPEAHVSSPPPEKSSSPPPEAHVSSPPPPEKSPPPPETKSPPTLTPEISPPPEGKSPPS 900
Query: 895 PXXXGGLXLXREXSPPXQXGEKNXP 969
+E PP K+ P
Sbjct: 901 HTPESSSPPSKESEPPPTPTPKSSP 925
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.9 bits (64), Expect = 4.2
Identities = 21/78 (26%), Positives = 23/78 (29%), Gaps = 2/78 (2%)
Frame = +1
Query: 715 PPP*XXKKTXXPSXGGTPPLTEXXXXFPPPXNPXXXPSSXXXYXKXKXXXPPPG--GXGG 888
PPP P P PPP P P++ PPPG G GG
Sbjct: 322 PPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGG 381
Query: 889 XXPXXXGGLXLXREXSPP 942
P R PP
Sbjct: 382 GGPPPPALPGGPRARGPP 399
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 7.4
Identities = 21/72 (29%), Positives = 22/72 (30%), Gaps = 2/72 (2%)
Frame = +3
Query: 594 GGXRXXPKXGGXFXKKPPPXXT--IXKXETPKRGGETRXXXXTPPVXXXKNXPPLXXGDP 767
GG P G PPP + P RG TPP PP G P
Sbjct: 1158 GGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGP 1217
Query: 768 PPXXXXXXLSPP 803
PP L P
Sbjct: 1218 PPPPGGRGLPAP 1229
>01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982
Length = 301
Score = 29.1 bits (62), Expect = 7.4
Identities = 24/85 (28%), Positives = 25/85 (29%), Gaps = 2/85 (2%)
Frame = +1
Query: 748 PSXGGTPPLTEXXXXFPPPXNPXXXPSSXXXYXKXKXXXPPPGG--XGGXXPXXXGGLXL 921
PS GG P P P + PS Y P PGG GG GG
Sbjct: 89 PSHGGGPS----GGALPSPSHGGAAPSHGGGYGASPPVTPSPGGGYGGGSPAPSHGGGAY 144
Query: 922 XREXSPPXQXGEKNXPXXAXGXXKG 996
S P G P G G
Sbjct: 145 GSSPSTPSGGGSSPTPSHGGGAYGG 169
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 28.7 bits (61), Expect = 9.8
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -3
Query: 515 PXXTPPXPXXGGXFXXXKXXPPPPPXRKKXIXAR 414
P PP P G PPPPP KK R
Sbjct: 1932 PPPPPPPPVEGKPKPPPHAPPPPPPEAKKSFMRR 1965
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,624,309
Number of Sequences: 37544
Number of extensions: 422377
Number of successful extensions: 1131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3747967944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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