Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_G11
         (1222 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC141917-1|AAI41918.1|  198|Homo sapiens PRB1 protein protein.         32   4.9  
K03206-1|AAA60187.1|  178|Homo sapiens PRB1 protein.                   31   6.4  

>BC141917-1|AAI41918.1|  198|Homo sapiens PRB1 protein protein.
          Length = 198

 Score = 31.9 bits (69), Expect = 4.9
 Identities = 25/89 (28%), Positives = 27/89 (30%), Gaps = 6/89 (6%)
 Frame = +1

Query: 715 PPP*XXKKTXXPSXGGTPPLTEXXXXFPPPXNPXXXPSSXXXYXKXKXXXPPPGGXGGXX 894
           PPP   K    P  GG  P        P    P    S        K   PPP G     
Sbjct: 50  PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQG 109

Query: 895 PXXXGG------LXLXREXSPPXQXGEKN 963
           P   GG      L   +   PP Q G K+
Sbjct: 110 PPPQGGNKPQGPLPPGKPQGPPAQGGSKS 138


>K03206-1|AAA60187.1|  178|Homo sapiens PRB1 protein.
          Length = 178

 Score = 31.5 bits (68), Expect = 6.4
 Identities = 21/76 (27%), Positives = 22/76 (28%)
 Frame = +1

Query: 715 PPP*XXKKTXXPSXGGTPPLTEXXXXFPPPXNPXXXPSSXXXYXKXKXXXPPPGGXGGXX 894
           PPP   K    P  GG  P        P    P    S        K   PPP G     
Sbjct: 50  PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQG 109

Query: 895 PXXXGGLXLXREXSPP 942
           P   GG       +PP
Sbjct: 110 PPAQGGSKSQSARAPP 125


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,538,814
Number of Sequences: 237096
Number of extensions: 2033387
Number of successful extensions: 4047
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3783
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17284516220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)