Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_G11
(1222 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 35 0.13
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 35 0.13
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 35 0.13
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 33 0.54
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.7
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 2.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 3.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 3.8
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 34.7 bits (76), Expect = 0.13
Identities = 19/61 (31%), Positives = 21/61 (34%)
Frame = +1
Query: 715 PPP*XXKKTXXPSXGGTPPLTEXXXXFPPPXNPXXXPSSXXXYXKXKXXXPPPGGXGGXX 894
PPP P GG+PP PPP P P + PPP G G
Sbjct: 272 PPPPPTGSPPPPPAGGSPPPPRAGSP-PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 330
Query: 895 P 897
P
Sbjct: 331 P 331
Score = 29.9 bits (64), Expect = 3.8
Identities = 22/80 (27%), Positives = 24/80 (30%)
Frame = +3
Query: 585 PXXGGXRXXPKXGGXFXKKPPPXXTIXKXETPKRGGETRXXXXTPPVXXXKNXPPLXXGD 764
P G P GG PPP P RG PP + PP G
Sbjct: 274 PPPTGSPPPPPAGG---SPPPPRAGSPPPPPPPRGSPPTGSL--PPPQAGGSPPPAGTGS 328
Query: 765 PPPXXXXXXLSPPXKPXXXS 824
PPP +P P S
Sbjct: 329 PPPPPRQKRQAPERSPPTGS 348
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 34.7 bits (76), Expect = 0.13
Identities = 19/61 (31%), Positives = 21/61 (34%)
Frame = +1
Query: 715 PPP*XXKKTXXPSXGGTPPLTEXXXXFPPPXNPXXXPSSXXXYXKXKXXXPPPGGXGGXX 894
PPP P GG+PP PPP P P + PPP G G
Sbjct: 293 PPPPPTGSPPPPPAGGSPPPPRAGSP-PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 351
Query: 895 P 897
P
Sbjct: 352 P 352
Score = 29.9 bits (64), Expect = 3.8
Identities = 22/80 (27%), Positives = 24/80 (30%)
Frame = +3
Query: 585 PXXGGXRXXPKXGGXFXKKPPPXXTIXKXETPKRGGETRXXXXTPPVXXXKNXPPLXXGD 764
P G P GG PPP P RG PP + PP G
Sbjct: 295 PPPTGSPPPPPAGG---SPPPPRAGSPPPPPPPRGSPPTGSL--PPPQAGGSPPPAGTGS 349
Query: 765 PPPXXXXXXLSPPXKPXXXS 824
PPP +P P S
Sbjct: 350 PPPPPRQKRQAPERSPPTGS 369
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 34.7 bits (76), Expect = 0.13
Identities = 19/61 (31%), Positives = 21/61 (34%)
Frame = +1
Query: 715 PPP*XXKKTXXPSXGGTPPLTEXXXXFPPPXNPXXXPSSXXXYXKXKXXXPPPGGXGGXX 894
PPP P GG+PP PPP P P + PPP G G
Sbjct: 278 PPPPPTGSPPPPPAGGSPPPPRAGSP-PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 336
Query: 895 P 897
P
Sbjct: 337 P 337
Score = 29.9 bits (64), Expect = 3.8
Identities = 22/80 (27%), Positives = 24/80 (30%)
Frame = +3
Query: 585 PXXGGXRXXPKXGGXFXKKPPPXXTIXKXETPKRGGETRXXXXTPPVXXXKNXPPLXXGD 764
P G P GG PPP P RG PP + PP G
Sbjct: 280 PPPTGSPPPPPAGG---SPPPPRAGSPPPPPPPRGSPPTGSL--PPPQAGGSPPPAGTGS 334
Query: 765 PPPXXXXXXLSPPXKPXXXS 824
PPP +P P S
Sbjct: 335 PPPPPRQKRQAPERSPPTGS 354
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 32.7 bits (71), Expect = 0.54
Identities = 24/78 (30%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Frame = +1
Query: 715 PPP*XXKKTXXPSXGGTPP-LTEXXXXFPPPXNPXXXPSSXXXYXKXKXXXPP-PGGXGG 888
PPP S GG PP ++ F PP P P P PGG GG
Sbjct: 351 PPPQQFHAPSPQSFGGPPPPVSSAPGNFAPP--PQSGPPGAFAPPPSAFGAPQGPGGPGG 408
Query: 889 XXPXXXGGLXLXREXSPP 942
P GG PP
Sbjct: 409 YGPPPPGGPGAPGSYGPP 426
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.7
Identities = 20/73 (27%), Positives = 21/73 (28%)
Frame = +3
Query: 594 GGXRXXPKXGGXFXKKPPPXXTIXKXETPKRGGETRXXXXTPPVXXXKNXPPLXXGDPPP 773
G P GG P T P GG PP PP+ G PPP
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Query: 774 XXXXXXLSPPXKP 812
PP P
Sbjct: 762 PPPPGGCPPPPPP 774
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = +1
Query: 718 PP*XXKKTXXPSXGGTPPLTEXXXXFPPPXNPXXXPSSXXXYXKXKXXXPPPGGXGGXXP 897
PP P GG PP++ PPP P K PPP G P
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.7
Identities = 20/73 (27%), Positives = 21/73 (28%)
Frame = +3
Query: 594 GGXRXXPKXGGXFXKKPPPXXTIXKXETPKRGGETRXXXXTPPVXXXKNXPPLXXGDPPP 773
G P GG P T P GG PP PP+ G PPP
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Query: 774 XXXXXXLSPPXKP 812
PP P
Sbjct: 762 PPPPGGCPPPPPP 774
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = +1
Query: 718 PP*XXKKTXXPSXGGTPPLTEXXXXFPPPXNPXXXPSSXXXYXKXKXXXPPPGGXGGXXP 897
PP P GG PP++ PPP P K PPP G P
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.7
Identities = 20/73 (27%), Positives = 21/73 (28%)
Frame = +3
Query: 594 GGXRXXPKXGGXFXKKPPPXXTIXKXETPKRGGETRXXXXTPPVXXXKNXPPLXXGDPPP 773
G P GG P T P GG PP PP+ G PPP
Sbjct: 285 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 344
Query: 774 XXXXXXLSPPXKP 812
PP P
Sbjct: 345 PPPPGGCPPPPPP 357
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = +1
Query: 718 PP*XXKKTXXPSXGGTPPLTEXXXXFPPPXNPXXXPSSXXXYXKXKXXXPPPGGXGGXXP 897
PP P GG PP++ PPP P K PPP G P
Sbjct: 319 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical protein
T24B8.4 protein.
Length = 866
Score = 30.7 bits (66), Expect = 2.2
Identities = 19/60 (31%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Frame = -2
Query: 1215 PXFFXXPKKNXXFXXGXXXPPGXPXXXFFFXGXX-XPPPXKXFFPXPXPXFXFXXPVXXP 1039
P FF P F P G P F G PPP P P P F P P
Sbjct: 61 PSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPP 120
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 3.8
Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Frame = +1
Query: 715 PPP*XXKKTXXPSXGGTPPLTEXXXXFP---PPXNPXXXPSS-XXXYXKXKXXXP--PPG 876
PPP + P GG PP +P PP P PS+ Y P PP
Sbjct: 317 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPS 376
Query: 877 GXGGXXP 897
G G P
Sbjct: 377 GHGMIPP 383
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 3.8
Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Frame = +1
Query: 715 PPP*XXKKTXXPSXGGTPPLTEXXXXFP---PPXNPXXXPSS-XXXYXKXKXXXP--PPG 876
PPP + P GG PP +P PP P PS+ Y P PP
Sbjct: 327 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPS 386
Query: 877 GXGGXXP 897
G G P
Sbjct: 387 GHGMIPP 393
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,209,975
Number of Sequences: 27780
Number of extensions: 242006
Number of successful extensions: 772
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3370329934
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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