Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_G09
         (1219 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    24   2.6  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   8.1  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +1

Query: 433 NHLHLENPLVHL*KLPQNAWHKRFMMRLNDCIDVDSCAWPTALLHH---AHH 579
           N LH  +  +H     QN  H+     +N C  +   +   A+LHH   +HH
Sbjct: 304 NLLHSNDLNMHQQHHQQNMSHEELSAMVNRCHPLSLSSDHQAMLHHNPMSHH 355



 Score = 23.0 bits (47), Expect = 4.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 451 SPNEDGFDSDVFNXGLVLGLAANG 380
           SP    F S + N G+  G+A NG
Sbjct: 43  SPQGASFGSSMLNSGMPGGMAMNG 66


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 420 TSESKPSSFGESVSAPVKITPERMAQE 500
           TS   P+S   + SAP+ I  +R A +
Sbjct: 39  TSSGSPASVASNASAPLHIPAKRAAYD 65


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +3

Query: 660 TFKQVRMICERMLHDQEVALRAEYESVLSTKLAEQYEAFVRFNLDQV 800
           + K V  I +++L+        +   +    L   YE FVR+ L ++
Sbjct: 369 SLKDVIEIVDKLLNPDLGLSLLQVAQIFKNLLENHYEEFVRYELGEL 415


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,029
Number of Sequences: 336
Number of extensions: 5162
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 35555306
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)