Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_G08
         (1271 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   4.9  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   8.5  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   8.5  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
            transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
 Frame = -3

Query: 1038 GGGXXXPPP----PXGG---GXPXPXXXGNPPXGGXXXKXXPPP 928
            GGG   P P    P  G   G P P   G PP GG   +  P P
Sbjct: 39   GGGAVQPDPGSCDPSVGLRQGIP-PHHYGGPPSGGQPPQGMPYP 81



 Score = 22.2 bits (45), Expect = 8.5
 Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
 Frame = -1

Query: 1010 PGGGGXPXPXXXETPPGGGXXXRXPP-----PPPGG 918
            P GGG   P      P  G     PP     PP GG
Sbjct: 37   PQGGGAVQPDPGSCDPSVGLRQGIPPHHYGGPPSGG 72


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +1

Query: 955  PPPGGVSXXXGXGXPPPPGGGXGXXP 1032
            PPP G S     G   PP  G    P
Sbjct: 1112 PPPSGSSGPGSTGSKSPPVAGFEESP 1137



 Score = 23.0 bits (47), Expect = 4.9
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -1

Query: 1016 PPPGGGGXPXPXXXETPPGGG 954
            PPP G   P     ++PP  G
Sbjct: 1112 PPPSGSSGPGSTGSKSPPVAG 1132



 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 925 GGGGGXLXXXPPPGGVS 975
           GGGG       PPGG S
Sbjct: 525 GGGGSGSGNNQPPGGPS 541



 Score = 22.2 bits (45), Expect = 8.5
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = -3

Query: 1017 PPPXGGGXPXPXXXGNPPXGG 955
            PPP G   P      +PP  G
Sbjct: 1112 PPPSGSSGPGSTGSKSPPVAG 1132


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +3

Query: 912 PXPPXGGGGXPXXXPPP 962
           P P  G GG P   P P
Sbjct: 263 PSPTAGAGGLPPQVPSP 279


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 841 PPXXPPPGPP 870
           PP  P PGPP
Sbjct: 115 PPLTPSPGPP 124


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,159
Number of Sequences: 336
Number of extensions: 5645
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 37405004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)