SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_G08
         (1271 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    42   2e-04
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    36   0.012
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.064
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.11 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.19 
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    31   0.34 
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.5  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    27   7.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 28/82 (34%), Positives = 30/82 (36%)
 Frame = +1

Query: 853  PPPGPPPXXXPAXXPXXXXPXXPPGGGGGXLXXXPPPGGVSXXXGXGXPPPPGGGXGXXP 1032
            PPP PP    P   P    P  PP    G     PPP GV+   G G PPPP       P
Sbjct: 732  PPPPPPAVIVPTPAP-APIPVPPPAPIMGGPPPPPPPPGVA---GAGPPPPP------PP 781

Query: 1033 PPXXPXXGXPFSXXXXXXXPPP 1098
            PP     G  +        P P
Sbjct: 782  PPAVSAGGSRYYAPAPQAEPEP 803



 Score = 33.9 bits (74), Expect = 0.048
 Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +3

Query: 852 TP-PXPPPXXPPGXXXXXXXPPXPPXG-GGGXPXXXPPP 962
           TP P P P  PP        PP PP G  G  P   PPP
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 30.3 bits (65), Expect = 0.59
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = -1

Query: 1022 PXPPPGGGGXPXPXXXETPPGGGXXXRXPPPPP 924
            P P P  GG P P     PPG       PPPPP
Sbjct: 752  PPPAPIMGGPPPP---PPPPGVAGAGPPPPPPP 781



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
 Frame = -1

Query: 1055 PXXGXXGGGXXPXPPPGGGGXPXPXXXETPP---GGGXXXRXPPP 930
            P     GG   P PPPG  G   P     PP    GG     P P
Sbjct: 753  PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -3

Query: 1020 PPPPXGGGXPXPXXXGNPPXGGXXXKXXPPPP 925
            PP P  GG P P     PP  G      PPPP
Sbjct: 753  PPAPIMGGPPPP-----PPPPGVAGAGPPPPP 779



 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +2

Query: 1031 PPPXXPXXGXPFPGXXXXXXPPPGXKXXFXPPGXXXPG 1144
            PPP  P    P P       PPP       PP    PG
Sbjct: 732  PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
 Frame = -1

Query: 1022 PXPPPGG-GGXPXPXXXETPPGGGXXXRXPPPPP 924
            P PPP      P P     PP        PPPPP
Sbjct: 733  PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 15/48 (31%), Positives = 15/48 (31%), Gaps = 4/48 (8%)
 Frame = +3

Query: 831 PXXSPXXTPPXPPPXXPP----GXXXXXXXPPXPPXGGGGXPXXXPPP 962
           P   P      PPP  PP    G       PP P    GG     P P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 35.9 bits (79), Expect = 0.012
 Identities = 28/79 (35%), Positives = 28/79 (35%)
 Frame = -1

Query: 1061 GXPXXGXXGGGXXPXPPPGGGGXPXPXXXETPPGGGXXXRXPPPPPGGXXGXXXXGXXAG 882
            G    G  GG   P P PGG G       E    GG         PGG  G    G   G
Sbjct: 187  GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFG--GGPGGFEG--GPGGFGG 242

Query: 881  XXXGGGPGGGXXGGXPGXF 825
               G G G G  GG PG F
Sbjct: 243  GPGGFGGGLGGFGGGPGGF 261



 Score = 30.3 bits (65), Expect = 0.59
 Identities = 23/69 (33%), Positives = 23/69 (33%)
 Frame = -3

Query: 1047 GXXGGGXXXPPPPXGGGXPXPXXXGNPPXGGXXXKXXPPPPXGXXGXXXXXXXGRXGXGG 868
            G  GGG   PPP  GG        G     G         P G  G       G  G GG
Sbjct: 191  GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHG-GFGGGPGGFEGGPGGFGGGPGGFGG 249

Query: 867  GAXGGXXGG 841
            G  GG  GG
Sbjct: 250  G-LGGFGGG 257



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 24/84 (28%), Positives = 24/84 (28%), Gaps = 3/84 (3%)
 Frame = -2

Query: 1096 GGGPXXXXPXKRGPPXXXXG-GGXGXXXXXXXXXXXXXXXXXXXPXGGGXXXGXPPPPXG 920
            GGG         GPP    G GG G                       G   G    P G
Sbjct: 187  GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 919  GXGGXXXXXXXPGGXXG--GGXGG 854
              GG       PGG  G  GG GG
Sbjct: 247  FGGGLGGFGGGPGGFGGGPGGHGG 270


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 33.5 bits (73), Expect = 0.064
 Identities = 20/62 (32%), Positives = 20/62 (32%)
 Frame = +1

Query: 853  PPPGPPPXXXPAXXPXXXXPXXPPGGGGGXLXXXPPPGGVSXXXGXGXPPPPGGGXGXXP 1032
            PPP PPP       P       P G G       PPP           P PP G     P
Sbjct: 311  PPPPPPPSRRNRGKP-------PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363

Query: 1033 PP 1038
            PP
Sbjct: 364  PP 365



 Score = 31.9 bits (69), Expect = 0.19
 Identities = 24/98 (24%), Positives = 25/98 (25%)
 Frame = +1

Query: 832  PGXPPXXPPPGPPPXXXPAXXPXXXXPXXPPGGGGGXLXXXPPPGGVSXXXGXGXPPPPG 1011
            P  P   P  G  P    +       P  PP   G      PP G  S       P PP 
Sbjct: 363  PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP- 421

Query: 1012 GGXGXXPPPXXPXXGXPFSXXXXXXXPPPXXKXXFXPP 1125
                   PP  P    P         PP        PP
Sbjct: 422  -SLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 20/73 (27%), Positives = 22/73 (30%), Gaps = 4/73 (5%)
 Frame = +1

Query: 856  PPGPPPXXXPAXXPXXXXPXXPPG--GGGGXLXXXPPPGGVSXXXGXGXP--PPPGGGXG 1023
            PP P P   P   P    P  PP    G       PP   ++     G P  PP      
Sbjct: 415  PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474

Query: 1024 XXPPPXXPXXGXP 1062
              PP   P    P
Sbjct: 475  APPPAPAPAPAAP 487



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 20/71 (28%), Positives = 21/71 (29%), Gaps = 2/71 (2%)
 Frame = +1

Query: 832  PGXPPXXPPPGPPPXXXPAXXPXXXXPXXPPGGGGGXLXXXPPPGGVSXXXGXGXPPPP- 1008
            P  PP     G PP    +       P  PP          PP G          PPPP 
Sbjct: 313  PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG-----RSAPPPPPPR 367

Query: 1009 -GGGXGXXPPP 1038
                 G  PPP
Sbjct: 368  SAPSTGRQPPP 378



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 28/101 (27%), Positives = 29/101 (28%), Gaps = 6/101 (5%)
 Frame = +1

Query: 841  PPXXPP-PGPPPXXXPAXXPXXXXPXXPPGG--GGGXLXXX---PPPGGVSXXXGXGXPP 1002
            PP  PP P  P    PA       P  PP        L      PPP         G PP
Sbjct: 267  PPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPP 326

Query: 1003 PPGGGXGXXPPPXXPXXGXPFSXXXXXXXPPPXXKXXFXPP 1125
               G      PP  P    P S        PP  +    PP
Sbjct: 327  IGNGSSNSSLPPPPP---PPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +3

Query: 825 KXPXXSPXXTPPXPPPXXPPGXXXXXXXPPXPP 923
           + P   P  + P PPP  PP        P  PP
Sbjct: 240 RPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPP 272



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 23/95 (24%), Positives = 24/95 (25%)
 Frame = +1

Query: 841  PPXXPPPGPPPXXXPAXXPXXXXPXXPPGGGGGXLXXXPPPGGVSXXXGXGXPPPPGGGX 1020
            PP  PP        P        P  PP          PPP  +S       PP P    
Sbjct: 338  PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP--LSSSRAVSNPPAPPPAI 395

Query: 1021 GXXPPPXXPXXGXPFSXXXXXXXPPPXXKXXFXPP 1125
                 P  P  G   S       P P       PP
Sbjct: 396  PGRSAPALPPLGNA-SRTSTPPVPTPPSLPPSAPP 429



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 15/47 (31%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
 Frame = +3

Query: 831 PXXSPXXTPPXPPPXXPPGXXXXXXXPPXPPXG---GGGXPXXXPPP 962
           P  +P   PP  PP  P G       PP  P       G P   P P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470



 Score = 27.5 bits (58), Expect = 4.2
 Identities = 19/70 (27%), Positives = 20/70 (28%)
 Frame = +3

Query: 831  PXXSPXXTPPXPPPXXPPGXXXXXXXPPXPPXGGGGXPXXXPPPXXXXXXXXXXXXXXXX 1010
            P  +P   PP  PP  PP        PP  P G    P   PP                 
Sbjct: 416  PVPTPPSLPPSAPPSLPPS------APPSLPMGAPAAP-PLPPSAPIAPPLPAGMPAAPP 468

Query: 1011 XXXXXPXPPP 1040
                 P PPP
Sbjct: 469  LPPAAPAPPP 478



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/47 (29%), Positives = 16/47 (34%)
 Frame = -3

Query: 1065 KGXPXXGXXGGGXXXPPPPXGGGXPXPXXXGNPPXGGXXXKXXPPPP 925
            +G P  G        PPPP     P     G+ P         PPPP
Sbjct: 322  RGKPPIGNGSSNSSLPPPPP---PPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = -1

Query: 1055 PXXGXXGGGXXPXPPPGGGGXPXPXXXETPPGGGXXXRXPPP 930
            P       G  P PP G    P P     P  G    R PPP
Sbjct: 341  PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG----RQPPP 378


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = +3

Query: 843 PXXTPPXPPPXXPPGXXXXXXXPPXPPXG 929
           P   PP PPP  PPG       PP PP G
Sbjct: 5   PPGNPPPPPP--PPGFEPPSQPPPPPPPG 31



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -1

Query: 1013 PPGGGGXPXPXXXETPPGGGXXXRXPPPPPGG 918
            PPG    P P     PPG     + PPPPP G
Sbjct: 5    PPGNPPPPPP-----PPGFEPPSQPPPPPPPG 31



 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 855 PPXPPPXXPPGXXXXXXXPPXPPXGG 932
           P  PPP  PP        PP PP  G
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 35/159 (22%), Positives = 38/159 (23%), Gaps = 1/159 (0%)
 Frame = +2

Query: 626  PPRGGXPXXPPXGGXPXEKXFXPGAPXGPEXXKGXXXGAFPX-APPPRETXXKXXXXXXX 802
            P   G P  P   G P        AP  P+          P  APP  +           
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136

Query: 803  XXXXXXXXXXXAFPPXXPPXAPPPXPXRPXXXXXXXPXXPXGGGGXXXXXXPPXGGFPXX 982
                       A PP   P   PP P +P       P    G          P  G P  
Sbjct: 1137 SGAPPVPKPSVAAPPVPAPSGAPPVP-KPSVAAPPVPAPSSG----IPPVPKPAAGVPPV 1191

Query: 983  XGXGXPPPXGGGGXXXPPPXXPXXGXPFPGXXXXXXPPP 1099
                  PP        PP   P    P P       P P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230



 Score = 31.5 bits (68), Expect = 0.26
 Identities = 15/44 (34%), Positives = 15/44 (34%)
 Frame = -1

Query: 1055 PXXGXXGGGXXPXPPPGGGGXPXPXXXETPPGGGXXXRXPPPPP 924
            P       G  P P P  G  P P   E PP        PP PP
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 23/90 (25%), Positives = 24/90 (26%), Gaps = 2/90 (2%)
 Frame = +1

Query: 832  PGXPPXXPPPGPPP--XXXPAXXPXXXXPXXPPGGGGGXLXXXPPPGGVSXXXGXGXPPP 1005
            P   P   PP P P     P   P    P  P    G  +   PPP             P
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAG--VPPVPPPSEAPPVPKPSVGVP 1208

Query: 1006 PGGGXGXXPPPXXPXXGXPFSXXXXXXXPP 1095
            P       PP   P  G P         PP
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
 Frame = +3

Query: 831  PXXSPXXTPPXPPPXX--PPGXXXXXXXPPXPPXGGGGXPXXXPPP 962
            P  +P   PP P P    PP        PP P    G  P   PPP
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP--VPPP 1194



 Score = 27.5 bits (58), Expect = 4.2
 Identities = 26/104 (25%), Positives = 27/104 (25%), Gaps = 2/104 (1%)
 Frame = +2

Query: 836  AFPPXXPPXAPPPXPXRPXXXXXXXPXXPXGGGGXXXXXXPPXGGFPXXX-GXGXPP-PX 1009
            A PP   P   PP P +P       P       G      P     P      G PP P 
Sbjct: 1129 AAPPVPVPSGAPPVP-KPSVAAPPVPAP----SGAPPVPKPSVAAPPVPAPSSGIPPVPK 1183

Query: 1010 GGGGXXXPPPXXPXXGXPFPGXXXXXXPPPGXKXXFXPPGXXXP 1141
               G    PP       P P       PPP        P    P
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 21/87 (24%), Positives = 21/87 (24%), Gaps = 2/87 (2%)
 Frame = +1

Query: 841  PPXXPPPGPPPXXXPAXXPXXXXPXXPPGGGGGXLXXXPPPGGVSXXXGXGXP--PPPGG 1014
            P    PP P P   P        P  P    G      P P   S       P   PP  
Sbjct: 1027 PSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVP 1086

Query: 1015 GXGXXPPPXXPXXGXPFSXXXXXXXPP 1095
                 PP   P    P         PP
Sbjct: 1087 APSGIPPVPKPSVAAPPVPKPSVAVPP 1113


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 147

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 21/65 (32%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
 Frame = +1

Query: 862  GPPPXXXPAXXPXXXXPXXPPGGGGGXLXXXPPPGGVSXXXGXGX--PPPPGG-GXGXXP 1032
            GPPP            P      G G      P G      G G   PPPP G G G  P
Sbjct: 82   GPPPMDPSMRGSLLSGPGVARPAGRGIPLGQAPVGLAGPVRGVGYTAPPPPAGFGRGAPP 141

Query: 1033 PPXXP 1047
            P   P
Sbjct: 142  PGFRP 146


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 17/41 (41%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
 Frame = -1

Query: 938 PPPPPGGXXGXXXXGXXAGXXXG-----GGPGGGXXGGXPG 831
           PPPP G   G    G   G   G     GG GGG  GG  G
Sbjct: 99  PPPPRGPLFGPRIGGGHHGPLHGPHGGFGGRGGGRMGGRGG 139


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/44 (36%), Positives = 16/44 (36%)
 Frame = +3

Query: 831  PXXSPXXTPPXPPPXXPPGXXXXXXXPPXPPXGGGGXPXXXPPP 962
            P      TPP PP   PP        PP  P    G P   PPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPP--------PPSAPPMPAGPPSAPPPP 1734



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/58 (29%), Positives = 18/58 (31%)
 Frame = +1

Query: 835  GXPPXXPPPGPPPXXXPAXXPXXXXPXXPPGGGGGXLXXXPPPGGVSXXXGXGXPPPP 1008
            G  P  P   PP     A  P    P  PP      +   PPP       G    PPP
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPP----PPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 21/88 (23%), Positives = 21/88 (23%)
 Frame = +2

Query: 836  AFPPXXPPXAPPPXPXRPXXXXXXXPXXPXGGGGXXXXXXPPXGGFPXXXGXGXPPPXGG 1015
            A PP  P    P    RP       P  P           PP            PPP   
Sbjct: 122  AAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASA----PPIPSKAPPIPSSLPPPAQP 177

Query: 1016 GGXXXPPPXXPXXGXPFPGXXXXXXPPP 1099
                  PP  P      P       PPP
Sbjct: 178  AAPVKSPPSAPSLPSAVPPMPPKVPPPP 205


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -1

Query: 998 GXPXPXXXETPPGGGXXXRXPPPPPG 921
           G P       P G G     PPPPPG
Sbjct: 270 GMPAMPMMNVPMGPGGAPLVPPPPPG 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,212,357
Number of Sequences: 5004
Number of extensions: 54422
Number of successful extensions: 391
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 691537944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -